PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G15740.1
Common NameLOC102707130
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 211aa    MW: 22273.6 Da    PI: 4.6498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G15740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-172170255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr +k +grWv+eIr p++   r r++lg+++t+e Aa+a +aa  +l+g
  OB06G15740.1 21 KYRGVRMRK-WGRWVSEIRRPNS---RERIWLGSYDTPEAAARAFDAAFVCLRG 70
                  8******99.**********933...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-282081IPR001471AP2/ERF domain
SMARTSM003804.3E-322185IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-182181IPR016177DNA-binding domain
PfamPF008472.2E-102165IPR001471AP2/ERF domain
PROSITE profilePS5103222.0492179IPR001471AP2/ERF domain
CDDcd000181.44E-172181No hitNo description
PRINTSPR003671.7E-92233IPR001471AP2/ERF domain
PRINTSPR003671.7E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDNVSSSSAP APATAAAAER KYRGVRMRKW GRWVSEIRRP NSRERIWLGS YDTPEAAARA  60
FDAAFVCLRG GAEAGINFPD SPPAVAAART SDPQEVYAAA VSHANRPPAS ARAAPPAAGV  120
VPAEEAHVVV DKPDVAGGNV APAPPPPPAV QVPGAGSFDW SQNPLYSPTC SYGLPVWMTA  180
EAAAEESKEE EDDEGTSDYL WSFQYSPTHP S
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G15740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126143e-70CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656736.11e-149PREDICTED: ethylene-responsive transcription factor ERF018-like
SwissprotQ84QC29e-34ERF17_ARATH; Ethylene-responsive transcription factor ERF017
SwissprotQ9S7L51e-33ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLJ3MC301e-147J3MC30_ORYBR; Uncharacterized protein
STRINGOB06G15740.11e-148(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]
  6. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]