PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G14500.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 421aa    MW: 45192 Da    PI: 4.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G14500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10206249447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WTt E++l++ +  + G g+Wk+I++     Rt+ q+ s+ qk+
     OB06G14500.1 206 WTTTEHKLFLLGLLECGRGNWKKISSQYVRSRTPVQVSSHAQKF 249
                      *************************99999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.968198254IPR017930Myb domain
SuperFamilySSF466891.05E-12201255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-7202251IPR009057Homeodomain-like
SMARTSM007172.9E-7202252IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-11203252IPR006447Myb domain, plants
CDDcd001678.24E-7206250No hitNo description
PfamPF002492.1E-7206248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDPMLGMDQC QWTPAELEAA RSIVARLNNG YYDVGSGNGN GNGNGTRHDR IVNELQAWFP  60
WRNVRQVIDL YVDLVVEMSS QAGGGPAQDG GAGAVVNPSF DLVNDNFGMP PELAAMNVDA  120
SMNFGGASMN YGDAGMNYGG TEMNYGDAGM NLGGAGMVFG GVPMEETVEQ TPAPVQAQVF  180
NGNYGEEVNQ GGGGRQQAAP NNGRFWTTTE HKLFLLGLLE CGRGNWKKIS SQYVRSRTPV  240
QVSSHAQKFF RRMENTTGKQ RYSINDVGLY DAEPSWGAGA AAAAAAVDNN NFAGWQALAF  300
AGGHLEPASG GAGAGHIAPA TSSSSVAAMN NVAQFWAPLL YNPQMQQQMV DMQMQQQMVD  360
TQMQNQQNWN DQQMMMGGIA PMEGAADHDN FVPAGADYQQ QELGAAYDAP AEQWMMNNNM  420
F
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G14500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.10.0PREDICTED: uncharacterized protein LOC107304324
TrEMBLJ3MBQ60.0J3MBQ6_ORYBR; Uncharacterized protein
STRINGOB06G14500.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.26e-19MYB_related family protein