PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB06G14490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 30812 Da PI: 5.2715 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.4e-09 | 145 | 188 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E+ l++++ + + g+W+ I++++ ++R++ q+ s+ + y OB06G14490.1 145 WTIDEHRLFLRGLRVYRCGDWDNISNHFVTTRSPVQVASHARRY 188 ****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-10 | 139 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.88 | 140 | 193 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-5 | 141 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-7 | 145 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 145 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.11E-7 | 145 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MDARVGTQWT EAEVREARTI VSMMTGAAYY EAGSSNGNGN NDSSTRHDRI VSELQSWFPW 60 RTVCQPADQP QDNDGAGAVV NATPPEDQAA MNVVDLGMNN GGAGVVVGGG PMEEMVVQAP 120 PPAPAPVHVV NQGPGRQYAA PNTIWTIDEH RLFLRGLRVY RCGDWDNISN HFVTTRSPVQ 180 VASHARRYSR RLRMAPSEQR GGVRDHVDLF DVGEPAIMHN GSSGAAMNGA GNDAAPVWAP 240 LLHSPQIQQQ MMQLQAQAQA QQRWDAPQTA TAGDGDGWCS CSSGGGSG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB06G14490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656692.1 | 1e-165 | PREDICTED: uncharacterized protein LOC102713918 | ||||
TrEMBL | J3MBQ5 | 0.0 | J3MBQ5_ORYBR; Uncharacterized protein | ||||
STRING | OB06G14490.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 8e-15 | Homeodomain-like transcriptional regulator |