PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G14480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25749.2 Da PI: 5.0611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 174 | 220 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+eE+ l++++ + +G g+Wk+I++++ ++Rt+ q+ s+ qky OB06G14480.1 174 RVVWTEEEHRLFLQGLRVFGRGDWKSISKHLVTTRTAVQVSSHAQKY 220 678*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.869 | 169 | 225 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-18 | 171 | 225 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-11 | 171 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-17 | 172 | 223 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.3E-12 | 173 | 223 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-13 | 174 | 220 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-9 | 177 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDSIVIEGWT ASEIEEARSL ITSPNSGGSN SSGGNGDKKH GSIVSELHEW FPWKTMTEVI 60 DFYLKLTVET PAIIHSLNNS VVDNSMSNID LALANENLRR LEKEETMLNN EGLLFDYPLE 120 EMEMGNQIDQ NIEMVVEKEV EVQAEAASVI KEKVVEVSKI LTSRQRVVPS MKRRVVWTEE 180 EHRLFLQGLR VFGRGDWKSI SKHLVTTRTA VQVSSHAQKY FLKMEAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G14480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642214.1 | 3e-95 | uncharacterized protein LOC107281238 | ||||
TrEMBL | J3MBQ4 | 1e-164 | J3MBQ4_ORYBR; Uncharacterized protein | ||||
STRING | OB06G14480.1 | 1e-165 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16549 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 5e-20 | MYB_related family protein |