PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G14080.1
Common NameLOC102710599
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 263aa    MW: 29431.9 Da    PI: 4.9996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G14080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.6e-071033123
                  EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                  y+C  Cg++F+++ +L+rH r  H
  OB06G14080.1 10 YSCAVCGRRFPTRPDLTRHFRQlH 33
                  99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5936No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5936IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-41033IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.2561038IPR007087Zinc finger, C2H2
PROSITE patternPS0002801233IPR007087Zinc finger, C2H2
CDDcd061676.31E-1028160No hitNo description
Gene3DG3DSA:3.40.50.10101.3E-485149IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
SGVAAPPVPY SCAVCGRRFP TRPDLTRHFR QLHQRERNKK LSRLRSLKGK KRQKFRERFI  60
SGNTKYDDAA RELLTPKVGY GLASELRRAG VHVRTVSDKP QAADHALKRQ VKHSVACGVD  120
WLVLVSDDSD FTDTVRKARA ADLRTVVVGD GCRALGSVAD IWLPWDRVEN GEVDEQMLQN  180
GAHMGFRDEE KEEQDDDEFT VDWDTSDLDG VVDDIVATRT KLFGAATMSA FADEEIMDGI  240
LGVGINGVDM LWSSDDEDED GYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G14080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656683.10.0PREDICTED: uncharacterized protein LOC102710599, partial
TrEMBLJ3MBL40.0J3MBL4_ORYBR; Uncharacterized protein
STRINGOB06G14080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-58C2H2-like zinc finger protein