PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G14070.1
Common NameLOC102714295
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 779aa    MW: 88790.5 Da    PI: 6.9746
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G14070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.25e-2254140290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v+++   HnH+la
  OB06G14070.1  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFTPMHNHQLA 140
                   7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105511.5E-31262355IPR018289MULE transposase domain
PROSITE profilePS509669.186543579IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-6544576IPR007527Zinc finger, SWIM-type
SMARTSM005756.0E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDSSRDSEEE RIQRKDNGEE TENGEDSGSA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FTPMHNHQLA KPGERHMLRS AKSLAVGKSG VIDPATSTES HSINGLSHMI  180
ESDIVEPPGY TIRDCYNHVS MQGIMIIEAG DSQSLVNYFK RRTSEEGMFY WDVQVDQEGR  240
MTNFFFRDAK SRNDYDCFGD AVIFDTTYRT NKYSLVCAPF VGVNHHWQNI VFGWAFLLDE  300
SSASYVWLFK SFLESMGGRS PKSIFTDQDE AIVQAVEQVF PNTQHCFSYW HILKNAQSQL  360
GTVNTSQTFQ NMFMKCIQGP DSEMELEESW AAMLNEFKLQ DNNWLSDLYR TRSRWCSAFN  420
KDTFDGGINS SQWGEVSNNT LNGISDESTS LTRFALLLEK VVKALRRNES EEDFRCSQTA  480
PVRAIKYSTV LKQAAESYTH KIYKLFEAEF LDGCGATSCH ESSCGGNLLR FEITMQGRGS  540
KVWTVLLDTS TMEISCGCRK FERMGLLCSH ALKAFSLQNV DTIPEKYISK RWTKDARRSM  600
YKLSQDDSTQ QECTEAELAY RNRATQYACS LIAKSQELEE SRKIFWDTLE TGEKALDVFF  660
EIRSLRNQTA KDVSKRDKKK KKSSKEPSAK KAKQTPAASS SVPVLAQPNE HQFQSAQDAQ  720
GNTTIGRPFY YQTFSSTPMQ PNQIYMHPNM HTMPLCAPQD FSAYSAIRPN SNFGGAKNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G14070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661740.0AK066174.1 Oryza sativa Japonica Group cDNA clone:J013056I21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655825.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_015694162.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_015694163.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_015694164.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1
TrEMBLJ3MBL30.0J3MBL3_ORYBR; Uncharacterized protein
STRINGOB06G14070.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5