PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G13860.1
Common NameLOC102707223
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 443aa    MW: 50076 Da    PI: 6.055
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G13860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-18144190148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
     OB06G13860.1 144 KGQWTLEEDRKLVKLVQQFGLRKWSHIAQMLP-GRVGKQCRERWHNHL 190
                      799*****************************.*************97 PP
2Myb_DNA-binding51.72.1e-16196238145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
     OB06G13860.1 196 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 238
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.169139194IPR017930Myb domain
SuperFamilySSF466897.55E-32141237IPR009057Homeodomain-like
SMARTSM007174.1E-16143192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-28145197IPR009057Homeodomain-like
PfamPF139216.4E-20147206No hitNo description
CDDcd001678.79E-16147190No hitNo description
SMARTSM007171.3E-15195243IPR001005SANT/Myb domain
PROSITE profilePS5129421.249195245IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-22198243IPR009057Homeodomain-like
CDDcd001671.28E-12198241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDFSCFQPHS GCCDDMPLDS YVQQNDHQEL HLVDHPLFEG VTHGHEYYSS YAGGSFLPFA  60
TYYDLGHDDY CPHGGGDKEA VVDQASPTVH KASPHLPLFT PKSEVSHLIG GGVVGSYKAF  120
EMNGRLIRRK KSSGKSLKKA NVVKGQWTLE EDRKLVKLVQ QFGLRKWSHI AQMLPGRVGK  180
QCRERWHNHL RPNIKKDTWS EEEDIVLIQT HKEVGNKWAE IAKHLPGRTE NSIKNHWNAT  240
KRRQFARRRS RASSKNPKSG TLLQNYIKSL GIGPIKSSVR LSPLEQPTVS SSPANTQKLA  300
QVNGVRTGSN LSNQMVTQET LSMDENDDIQ TNTCEEFQLL VSTYGDLCLD MCDHLFETKE  360
EAPYQVYNID GDDVDMNYIF NHIDYANKIG HEIEDMEMAW DDDVLELEDN ESGSSPLETP  420
AVHVKEEMDL VEMVTRTQFA ASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-451422442104C-Myb DNA-Binding Domain
1msf_C1e-451422442104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G13860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418120.0AK241812.1 Oryza sativa Japonica Group cDNA, clone: J065210K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694367.10.0PREDICTED: transcription factor MYB46-like isoform X1
TrEMBLJ3MBJ20.0J3MBJ2_ORYBR; Uncharacterized protein
STRINGOB06G13860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-62myb domain protein 98