PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G11200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 376aa    MW: 40547.1 Da    PI: 8.7912
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G11200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-2498142145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  OB06G11200.1  98 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 142
                   79****************************************986 PP

2QLQ33.81.1e-1236601236
           QLQ 12 ksQilAyKyLaanqPvPpeLlqaiq 36
                  ++Q+l+yKyL+a++PvP +Ll++i+
  OB06G11200.1 36 EQQALIYKYLMAGVPVPGDLLLPIR 60
                  89*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166613.7012661IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.8E-73660IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.34698142IPR014977WRC domain
PfamPF088794.4E-2199141IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLSSSPSAAA GMMGGGGGGG YQHHHQRGAA GRAGVEQQAL IYKYLMAGVP VPGDLLLPIR  60
PHSAAAATYS FANPAAAPFY HHHHPSLSYY AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP  120
DSKYCERHMH RGRNRSRKPV ESKTAAPAPQ SQPQQSNVAA TATHDADAPL PSLAVGAKTH  180
GLSLGGAGSS QFHVDASSYG SKYSLGAKAD VGELSFFSGA SGNTRGFTID SPTDNPWHSL  240
PSSVPPYPMS KPRDSGLLPG AYSYSHLEPS QELGQVTIAS LSQEQERRSF GGGAGGLLGN  300
AKHENQPLRP FFDEWPGRRD SWSEMDEERS NQTSFSTTQL SISIPMPRCG SPISLRLPLA  360
SLWLPVDLFH TDDSFH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G11200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1035080.0AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655725.10.0PREDICTED: growth-regulating factor 5
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLJ3MAS60.0J3MAS6_ORYBR; Uncharacterized protein
STRINGOB06G11200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-30growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]