PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G11200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 376aa MW: 40547.1 Da PI: 8.7912 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.2 | 1.6e-24 | 98 | 142 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OB06G11200.1 98 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 142 79****************************************986 PP | |||||||
2 | QLQ | 33.8 | 1.1e-12 | 36 | 60 | 12 | 36 |
QLQ 12 ksQilAyKyLaanqPvPpeLlqaiq 36 ++Q+l+yKyL+a++PvP +Ll++i+ OB06G11200.1 36 EQQALIYKYLMAGVPVPGDLLLPIR 60 89*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 13.701 | 26 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.8E-7 | 36 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.346 | 98 | 142 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-21 | 99 | 141 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MLSSSPSAAA GMMGGGGGGG YQHHHQRGAA GRAGVEQQAL IYKYLMAGVP VPGDLLLPIR 60 PHSAAAATYS FANPAAAPFY HHHHPSLSYY AYYGKKLDPE PWRCRRTDGK KWRCSKEAHP 120 DSKYCERHMH RGRNRSRKPV ESKTAAPAPQ SQPQQSNVAA TATHDADAPL PSLAVGAKTH 180 GLSLGGAGSS QFHVDASSYG SKYSLGAKAD VGELSFFSGA SGNTRGFTID SPTDNPWHSL 240 PSSVPPYPMS KPRDSGLLPG AYSYSHLEPS QELGQVTIAS LSQEQERRSF GGGAGGLLGN 300 AKHENQPLRP FFDEWPGRRD SWSEMDEERS NQTSFSTTQL SISIPMPRCG SPISLRLPLA 360 SLWLPVDLFH TDDSFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G11200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103508 | 0.0 | AK103508.1 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655725.1 | 0.0 | PREDICTED: growth-regulating factor 5 | ||||
Swissprot | Q6AWY4 | 0.0 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | J3MAS6 | 0.0 | J3MAS6_ORYBR; Uncharacterized protein | ||||
STRING | OB06G11200.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11046 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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