PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10430.1
Common NameLOC102720992
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 295aa    MW: 32732.2 Da    PI: 8.8029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.4e-133781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
     OB06G10430.1 37 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 81
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-163187IPR009057Homeodomain-like
PROSITE profilePS5129414.6283286IPR017930Myb domain
TIGRFAMsTIGR015571.0E-183584IPR006447Myb domain, plants
SMARTSM007172.7E-103684IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-63677IPR009057Homeodomain-like
PfamPF002491.1E-103781IPR001005SANT/Myb domain
CDDcd001676.40E-83982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSAPPPLDE SSGPAGQPPE DDGGRRVRKP YTITKSRESW TEPEHDKFLE ALQLFDRDWK  60
KIEAYVGSKT VIQIRSHAQK YFLKVQKNGT GEHLPPPRPK RKAAHPYPHK ASKKAPHVVL  120
PQQASLIMEQ GCLIPMDASP VVRKFCANDV FPSWDSGLAQ SFSPRHTQGV ANNCSSSIES  180
QSGTWPTSEA IEQEIGLPKL RALPDFAQVY NFLGSVFDPE TSGHLQRLRE MNPIDVETVL  240
LLMKNLSINL ASPHFEAHRK VLASHGSSGD QVKHETLGDL GSTHKLHLPF MVTSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196400.0AK119640.1 Oryza sativa Japonica Group cDNA clone:002-130-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655684.10.0PREDICTED: protein REVEILLE 6-like
SwissprotQ8H0W31e-89RVE6_ARATH; Protein REVEILLE 6
TrEMBLJ3MAJ90.0J3MAJ9_ORYBR; Uncharacterized protein
STRINGOB06G10430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]