PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10310.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 359aa    MW: 41058.8 Da    PI: 6.8801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.82.5e-54161541129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                   +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++        ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  OB06G10310.1  16 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringggAAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 111
                   69****************************.99**************95577777765555778********************************* PP

           NAM  90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                   k+++++k++    vg++ktLv+y+grap+g+k+dW+mheyrle
  OB06G10310.1 112 KPIYATKQHSlglVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 154
                   *****75554677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-597174IPR003441NAC domain
PROSITE profilePS5100558.93716174IPR003441NAC domain
PfamPF023652.1E-2817153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEMDGCSMSS TQQAQVPPGF RFHPTDEELV DYYLRKKVAA RRIDLNVIKD VDLYKIEPWD  60
LQERCRINGG GAAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH  120
SLGLVGMRKT LVYYRGRAPN GHKSDWIMHE YRLETSETAP PPEEGWVVCR VFKKRLPTTR  180
RDSDHDAPAC NWYIDEDASP PAFLSPMSRS MRPHHQGITL QEQHLHMTYK HRSPDLISSK  240
IQQLQVPAGH HHHHLNTMPH ELESSASFHS LLVSPEHHQI NMHHAQADQL FDDMHAVTAT  300
DWRILDKFVA SQLSHDATNK GAADYTDEGD ILQVNDKQEV AAPDYASTST SSSQIDPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47101759169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694236.10.0PREDICTED: NAC domain-containing protein 105-like
SwissprotQ9FWX21e-103NAC7_ARATH; NAC domain-containing protein 7
TrEMBLJ3MAI70.0J3MAI7_ORYBR; Uncharacterized protein
STRINGOB06G10310.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.13e-95NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]