PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G35770.1
Common NameLOC102703866
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 297aa    MW: 32435.3 Da    PI: 4.3198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G35770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05272294223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ C+k+F++ + L++H +  H
  OB05G35770.1 272 SCKSCNKTFNSDMALQSHSKAkH 294
                   6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034271297IPR007087Zinc finger, C2H2
PROSITE patternPS000280273294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFWGLEVKP GQTVKCEPED DRFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD  60
KFPQIQFDLV FEKEFELSHT SKTASVFFSG YKVSQPPEED EMDFDSEEVE DEEEEEKIIP  120
VPKANGKVQG MENVQKKGKT IPSASKSKAV VNDDDDDDET DEDDSGDEGL SPEDDDDDDS  180
SDDDSSEDDE DESDEEETPK KPETGKKRAA EIVLKTPASD KKAKIATPSG QKTGDKKGVH  240
VATPHPAKQA SKTPVNDKAK EKSPKSGGGS VSCKSCNKTF NSDMALQSHS KAKHPTK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G35770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728450.0AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654887.10.0PREDICTED: histone deacetylase HDT2-like isoform X2
SwissprotQ9M4U56e-96HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLJ3MAF30.0J3MAF3_ORYBR; Uncharacterized protein
STRINGOB05G35770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.16e-29histone deacetylase 2C