PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G35300.1
Common NameLOC102703403
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 281aa    MW: 29657.2 Da    PI: 8.0433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G35300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
     OB05G35300.1 130 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 174
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.495123179IPR017930Myb domain
SuperFamilySSF466891.64E-16124180IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-17126178IPR006447Myb domain, plants
SMARTSM007173.8E-10127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10127170IPR009057Homeodomain-like
PfamPF002492.2E-10130173IPR001005SANT/Myb domain
CDDcd001675.62E-9130175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAWRCSHSTA ACRVGAGQRD GEAGAAMSSG EEGGGAAAGL RLFGVQLHAA ASAPTASQHL  60
HKSYSMDCLR LQDSSPCLAS LLSPSPSSSP PLPSALLLSI GEECERPADG YLSDGPHGAA  120
TMRERKKGVP WSEQEHRLFL AGLEKLGKGD WRGISRSFVT TRTPTQVASH AQKFFLRQNS  180
NGKKTNKRRT SLFDMVQDCD SGRSLASDPA SHCKNISASL SLKVSHQKSA DSVWLSSEAS  240
VSDAAPAVME QAQQAHGYGS HHCTPLDLEL GMSLSTPSIG T
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G35300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0598131e-148AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence.
GenBankAK0685951e-148AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence.
GenBankHQ8588111e-148HQ858811.1 Oryza sativa Japonica Group isolate UT1191 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655650.20.0PREDICTED: uncharacterized protein LOC102703403
TrEMBLJ3MAA60.0J3MAA6_ORYBR; Uncharacterized protein
STRINGOB05G35300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-37MYB_related family protein