PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G33720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 25684.4 Da PI: 6.4018 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.1e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ l+++++ G g W++ ar g+ Rt+k+c++rw++yl OB05G33720.1 22 KGPWTMEEDLSLANYIAANGDGAWNALARAAGLSRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+v++ +++G++ W++Iar+++ gRt++++k++w++ OB05G33720.1 75 RGNITPEEHTLIVELQARWGNR-WSKIARHLP-GRTDNEIKNFWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.67 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-28 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-10 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-7 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.707 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.78E-12 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEYTVDGSGD GGEQQEAAAV RKGPWTMEED LSLANYIAAN GDGAWNALAR AAGLSRTGKS 60 CRLRWLNYLR PDVRRGNITP EEHTLIVELQ ARWGNRWSKI ARHLPGRTDN EIKNFWRTKI 120 QKKHRRRTYG IHATTSESIR PAAAGYLTAV AEDQGSSSIS GRTTVVVTQE YGIAAPQLGS 180 LSLDHPASYP SAIHGGEGAD AGGDIVVSEE FLAASNDNFW VLEDLWPTVQ SLHGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 22 | 123 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G33720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 4e-54 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 4e-54 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 4e-54 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 4e-54 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655601.2 | 1e-173 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | J3M9U8 | 1e-172 | J3M9U8_ORYBR; Uncharacterized protein | ||||
STRING | OB05G33720.1 | 1e-173 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 9e-69 | myb domain protein 21 |