PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G33440.1
Common NameLOC102707403
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 275aa    MW: 29888.5 Da    PI: 8.8527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G33440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18117168256
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+++AeIrd  +   k +r++lg+f ta+eAa a++ a+++++g+
  OB05G33440.1 117 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDMAALRMRGH 168
                   69*******.**********332...34**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.21E-28116175No hitNo description
SMARTSM003801.2E-34117181IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-22117176IPR016177DNA-binding domain
PROSITE profilePS5103223.248117175IPR001471AP2/ERF domain
PfamPF008471.1E-14117168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30117175IPR001471AP2/ERF domain
PRINTSPR003672.7E-10118129IPR001471AP2/ERF domain
PRINTSPR003672.7E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAIGAAPGSN QPRDTSNILE NVWASIMTGC TPKTSSVVSM ASEEENSAIL QRLPSLGRWI  60
SMGAQEWDEL LSGPALASDS SGELKLVASP GDQDGHRQVI VVNRTTTSSS AAAACKSYRG  120
VRRRPWGKFA AEIRDTRRKG ARVWLGTFAT ADEAALAYDM AALRMRGHRA HLNFPLDTVR  180
GHLERELRAG RSDQTTATRV LRRKRRRNTT TDSAAARSAV LAADVITATN RDQMLSFASE  240
SDQISTQKCS TGDAGAIDFD EIGGEYWDYL FPPLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26113176164ATERF1
3gcc_A1e-26113176164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G33440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.10.0PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLJ3M9S00.0J3M9S0_ORYBR; Uncharacterized protein
STRINGOB05G33440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-18ERF family protein