PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G32250.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 208aa    MW: 22336.8 Da    PI: 10.1318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G32250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.63.3e-3017124192
                   EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                   f+k+ tpsdv+k++rlv+pk++ae+h                 g  + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v
  OB05G32250.1  17 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlppptttsvlagaG-GECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAV 112
                   89***************************888888888888743.445999********************************************** PP

                   EEEE-SSSEE.. CS
            B3  81 vFkldgrsefel 92 
                    F+++  + ++l
  OB05G32250.1 113 GFYRSAGKHAQL 124
                   ***775555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-4012136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.33E-2815117No hitNo description
SuperFamilySSF1019365.76E-3015129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.37917132IPR003340B3 DNA binding domain
SMARTSM010193.4E-2017134IPR003340B3 DNA binding domain
PfamPF023623.9E-2717126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
PPCPAAPPAA AAREHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPPP TTTSVLAGAG  60
GECKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD AVGFYRSAGK  120
HAQLFIDCKI RSKQSATTAA FLSARAATPP APAVKAIRLF GVDLLTAAAP EQDAAVAMAK  180
SKRAMDDAIA ESQPHVVFKK QCIELALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-531413211118DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G32250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307251e-175AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence.
GenBankAC1359251e-175AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence.
GenBankAC1364921e-175AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence.
GenBankAK2433631e-175AK243363.1 Oryza sativa Japonica Group cDNA, clone: J100061M08, full insert sequence.
GenBankAP0149611e-175AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-175CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655554.11e-151PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H44e-98Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLJ3M9F11e-151J3M9F1_ORYBR; Uncharacterized protein
STRINGOB05G32250.11e-151(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-61related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]