PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G32030.1
Common NameLOC102706196
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 311aa    MW: 33424 Da    PI: 5.5283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G32030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
     OB05G32030.1 16 KGLWSPEEDEKLYNHIVRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding52.61.1e-1669113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
     OB05G32030.1  69 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 113
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4011163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-231266IPR009057Homeodomain-like
SuperFamilySSF466895.14E-2914110IPR009057Homeodomain-like
SMARTSM007173.7E-121565IPR001005SANT/Myb domain
PfamPF002491.1E-141663IPR001005SANT/Myb domain
CDDcd001673.27E-111963No hitNo description
PROSITE profilePS5129426.03864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2667118IPR009057Homeodomain-like
SMARTSM007172.5E-1668116IPR001005SANT/Myb domain
PfamPF002496.5E-1569113IPR001005SANT/Myb domain
CDDcd001671.39E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRLSSGGGV QAKLRKGLWS PEEDEKLYNH IVRHGVGCWS SVPKLAGLQR CGKSCRLRWI  60
NYLRPDLKRG SFSQQEEDLI VALHEILGNR WSQIASHLPG RTDNEIKNFW NSCLKKKLRQ  120
RGLDPATHKP LAAAAAASSG GSADTQLADE DHKPHADGLA AKQSVFDPFP VTDFGVGFDL  180
GAANMAAALY GGHFDGKDPD AAGFVADYSS VLDVSENLGY GAESSSNSSN WTCAEVGNVL  240
DSEVMHWASA TGAAAATTAK AEPFADMEQQ HSGYGGAGGG QVEDDATLEH KFPLPCQEQS  300
LAHFDFNLEY F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141185108B-MYB
1h8a_C1e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G32030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874690.0AK287469.1 Oryza sativa Japonica Group cDNA, clone: J043021L20, full insert sequence.
GenBankCT8377890.0CT837789.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047M16, full insert sequence.
GenBankGU0467880.0GU046788.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654733.10.0PREDICTED: myb-related protein Hv33-like
SwissprotP200271e-119MYB3_HORVU; Myb-related protein Hv33
TrEMBLJ3M9C90.0J3M9C9_ORYBR; Uncharacterized protein
STRINGOB05G32030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-74myb domain protein 86