PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G31800.1

Common Name

LOC102702939

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 442aa MW: 49590.4 Da PI: 10.057

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G31800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	132	174	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++ OB05G31800.1 132 AWSREETDQLFELCERFDLR-FIVIADRFPTDRSMEDLKSRYYS 174 7*****************.*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	1.7E-30	105	179	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	3.2E-6	129	178	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.06E-5	129	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-5	132	177	IPR009057	Homeodomain-like
CDD	cd11658	4.63E-17	133	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDAKDILGLP KTAFPSVQEK KTRTPKEPQR KPDGVSREVY ALTGGVGMAP LMPTVEASHL 60 KRRPAVEKEK VTWQWLPFTS SARSDSLQLY HWVRVVNGAP PTGDYHFAKY NKKADVLKYN 120 DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TDRSMEDLKS RYYSVTRALL 180 IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QQERKDAEIL AEAKRIMESR 240 AASKHTEEVG TLASFDNATV SADGVSPLSN AHPSSTATLQ AAPVNSSIPA SLRMLRVYLR 300 TQALDQMVQA ASASAGLRVI KRVDQTLQDL GVNLKPKVPT KAVCVEHLEL RNEILTLLNL 360 QKQLQNKEAE VSANRENSFT EAPSTPKRAN RDVDRPFVPD TVGFVGERAG KRDHKRKTAG 420 RFMDAPPSPP QSKRPRKLKA SD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDAKDILGLP KTAFPSVQEK KTRTPKEPQR KPDGVSREVY ALTGGVGMAP LMPTVEASHL  60
KRRPAVEKEK VTWQWLPFTS SARSDSLQLY HWVRVVNGAP PTGDYHFAKY NKKADVLKYN  120
DEEYEKYLID PAWSREETDQ LFELCERFDL RFIVIADRFP TDRSMEDLKS RYYSVTRALL  180
IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QQERKDAEIL AEAKRIMESR  240
AASKHTEEVG TLASFDNATV SADGVSPLSN AHPSSTATLQ AAPVNSSIPA SLRMLRVYLR  300
TQALDQMVQA ASASAGLRVI KRVDQTLQDL GVNLKPKVPT KAVCVEHLEL RNEILTLLNL  360
QKQLQNKEAE VSANRENSFT EAPSTPKRAN RDVDRPFVPD TVGFVGERAG KRDHKRKTAG  420
RFMDAPPSPP QSKRPRKLKA SD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	3e-19	104	184	4	88	DNA methyltransferase 1-associated protein 1
4iej_A	3e-19	104	184	4	88	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G31800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071090	0.0	AK071090.1 Oryza sativa Japonica Group cDNA clone:J023079C11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654721.2	0.0	PREDICTED: SWR1-complex protein 4
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	J3M9A6	0.0	J3M9A6_ORYBR; Uncharacterized protein
STRING	OB05G31800.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6153	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-172	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	102702939

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]