PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G31600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 434aa    MW: 47656.2 Da    PI: 8.0948
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G31600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-1287140755
           AP2   7 rwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   + ++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  OB05G31600.1  87 YKHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 140
                   8899***********888855666447*************************98 PP
2AP251.13.2e-16183234155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OB05G31600.1 183 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 234
                   89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.974148IPR001471AP2/ERF domain
SMARTSM003804.1E-1974154IPR001471AP2/ERF domain
PfamPF008471.2E-887140IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1387149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-1388149IPR001471AP2/ERF domain
CDDcd000183.92E-24183242No hitNo description
PfamPF008474.1E-11183234IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-17183243IPR016177DNA-binding domain
SMARTSM003801.7E-26184248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17184242IPR001471AP2/ERF domain
PROSITE profilePS5103218.979184242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDHSIMMVKS EIENYPGSSP AMTINAPDGG TEVGPVVRRR RREPSLLAPI NGDTNGSGIG  60
KTSLSGITVK RSSRFRGVSR FRTCRDYKHR WTGRFEAHLW DKNSWNPTQR KKGKQVYLGA  120
YDEEEAAARA YDLAALKYWG PTTYTNFPVM DYEKELKIME NLTKEEYLAS LRRKSSGFSR  180
GVSKYRGVAR HHQNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYKGVNAVTN  240
FDLRSYITWL KPAPAPVAMN PEALAMQIPA DHQFLPVETQ MVMLPHSHSN PFISDHNAAP  300
LGGGGGGGGG DDGGSSSSNQ EASMMVSPSV SRKRGSSTAL SLLLKSSMFR QLVEKNSDAG  360
EGNGGEIREQ LGAHPAEGYE YHNFFRGDAA PEMCDLLSSG SVHAASSAGF EGDVACFGDD  420
ERTAWDGFGS MQMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G31600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851120.0AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692677.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3M9860.0J3M986_ORYBR; Uncharacterized protein
STRINGOB05G31600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-74AP2 family protein