PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G29850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 312aa    MW: 35360.9 Da    PI: 8.4874
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G29850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.3e-142461340
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                  +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk 
  OB05G29850.1 24 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKA 61
                  89**********************************96 PP
2TCR50.34.6e-16109145339
           TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  OB05G29850.1 109 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 145
                   589********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-132263IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.33923147IPR005172CRC domain
PfamPF036384.3E-102560IPR005172CRC domain
SMARTSM011141.7E-15107148IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-11110144IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNQLALTPTP KRQKVEESAD GNGCKHCACK KSRCLKLYCP CFAGGGYCSE KCGCQPCFNK  60
AAYAETVQTT RKVLLSRQKR MSLKINRRSE TNAEAVEDAH HSSSSTPPRR GCNCKKSSCL  120
KKYCDCYQDG TGCSLFCRCE DCRNPFGKNG IMAEESKRFL YTGADLDHSE DEHDFVVERS  180
PRLQSPISKE SSFQQTPPHM RAANRDTHMF PQALSQWQPR SWHCSKRQSN DRVIDDTGEY  240
KNSNHDWQLS KQEDSYSISR CVQILNGMVE LSQVEKSVAP DVFLQAGNRE IFVSLSGDVR  300
ALWLKRKIQN LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-122514412120Protein lin-54 homolog
5fd3_B9e-122514412120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G29850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080530.0AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692774.10.0PREDICTED: CRC domain-containing protein TSO1-like
SwissprotQ8L5481e-41TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLJ3M8R10.0J3M8R1_ORYBR; Uncharacterized protein
STRINGOB05G29850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-44Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]