PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G29420.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 371aa    MW: 39362.8 Da    PI: 6.8508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G29420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.6e-062612981254
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OB05G29420.1 261 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 298
                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-6259303No hitNo description
SuperFamilySSF474597.59E-12259317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0061260304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9263307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKLLTTSEGQ NSTQVRSQNP PPSSSSPPAR SISTRRSGPH APLNLIRIAM ADEWTWSSSS  60
ARAGDEAACS TAEPTGESAV GSDPMGFSQP GLPDGAVAAV AASSSSSFLL ADRHMDYWTQ  120
DFMGGRAPVA AEAAAAAASS FNTLLQLQGD AASHRLLLDD QSAAASPRAP SPSPHLVPSP  180
YGDGATVAAP PPYEADSLRY CSFSSYAGGF LQNQALTWLV QQPNADVCSP ETTRGTAPAH  240
EPTVKKARIE APSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD  300
QVASLSSPYL RCGRPMQQQH QQGSHKSKDN GEAKQDLRSR GLCLVPVAST YTVASETATE  360
FWHPTFGGTF R
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G29420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378341e-132CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655458.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLJ3M8L80.0J3M8L8_ORYBR; Uncharacterized protein
STRINGOB05G29420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-48bHLH family protein