PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G28830.1 | ||||||||
Common Name | LOC102712536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 287aa MW: 31880.4 Da PI: 4.8389 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.3 | 2e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s +++++ + +++dfl d+v + OB05G28830.1 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYGITVQRGVKTVSSSHLKQCIHSYNVYDFLRDVVSK 86 5789**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-19 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-17 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YGITVQRGVK 60 TVSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR 120 NEAANHTNNG RGRGRGRGRG RRGGRGSERE ILSAYEKFEE NHEFPPGEFS KPVELKVDVS 180 VDGTEANEAK EVTPLSNARA SLRNIDLNID LTDYDDEDSA PPEVQPSAPA VGVLTASSGP 240 PVSEVKEEAK TKDLLGWQLP EINMDPVQFA LSSNHRLEED EDYDNEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 139 | RGRGRGRGRG |
2 | 130 | 140 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G28830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288048 | 0.0 | AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds. | |||
GenBank | AK068320 | 0.0 | AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654586.1 | 0.0 | PREDICTED: dr1-associated corepressor-like isoform X1 | ||||
TrEMBL | J3M8F9 | 0.0 | J3M8F9_ORYBR; Uncharacterized protein | ||||
STRING | OB05G28830.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-54 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Entrez Gene | 102712536 |