PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28710.1
Common NameLOC102708443
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 342aa    MW: 38236.2 Da    PI: 8.3453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-104785543
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43
                  k  rr+++NReAAr+sR+RKka++++Le+   +L +  +
  OB05G28710.1 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLNQLEQ 85
                  6789************************96655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-44396IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9564588IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-84589No hitNo description
PfamPF001702.8E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-74789No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141444.5E-30130204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVYASPGTDA STDPDIDKNI RMFEQGHLPN PIASDSSDKS KGKLGQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLENSRLKL NQLEQELQHA RQQGIIISTS DDQCRSTSEN GALIFNMEYT  120
RWLGEQNKLI NELRAAVHSH AGDDDLQSIV NTIMVHNEEF FRLKGVAAKA DALHVLSGTW  180
RTPLERCFLW LGGFRPSELL KLLANQLEPL TEQQLASLCN RQQSSQEAEE ALSQRMEIIQ  240
HSLAETIASQ LGRAGAGSSG NAADHTAAAL RKIGTMESLL QQADDLRLQS LQQMQRVLTT  300
RQSARALLLV SDYFSRLRAL SSLWISRPHS KCVDIDTVVT DP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655440.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ415581e-162HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLJ3M8E70.0J3M8E7_ORYBR; Uncharacterized protein
STRINGOB05G28710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169461111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-131bZIP family protein