PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G28570.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 489aa    MW: 55025 Da    PI: 4.5907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G28570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-124587143
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                     +g+WT+ Ed +l  +vk+ G ++Wk+  +  g+ R++k+c++r
     OB05G28570.1 45 KGPWTPSEDAILEAYVKKNGQRNWKKLQNDTGLLRCGKSCRLR 87
                     79******************************99*******97 PP
2Myb_DNA-binding32.22.4e-1092151146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqk 46 
                      +g++T+eE+ ++++++ +lG++ W+  a +                  gRt++++k++w++
     OB05G28570.1  92 KGAFTKEEENKIIRLHYKLGNK-WAQMATCPSlsiiiavdlttcsqlPGRTDNEIKNYWNT 151
                      799*******************.88877777788888888888888889**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.3374086IPR017930Myb domain
SuperFamilySSF466894.87E-1843149IPR009057Homeodomain-like
SMARTSM007179.2E-44488IPR001005SANT/Myb domain
PfamPF002492.3E-104587IPR001005SANT/Myb domain
CDDcd001671.20E-74787No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1447106IPR009057Homeodomain-like
PROSITE profilePS5129415.35787157IPR017930Myb domain
SMARTSM007179.7E-991155IPR001005SANT/Myb domain
CDDcd001671.02E-794151No hitNo description
Gene3DG3DSA:1.10.10.607.8E-19107152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MQGSESDGVS DKMNQFKSDS DDESFVDKDS SMGIAPTRAV ATFKKGPWTP SEDAILEAYV  60
KKNGQRNWKK LQNDTGLLRC GKSCRLRPTL KKGAFTKEEE NKIIRLHYKL GNKWAQMATC  120
PSLSIIIAVD LTTCSQLPGR TDNEIKNYWN TRRKKCKNVH SLLYPDDVCQ EDLNEDQNES  180
TDFSFGEKLS NDPLYVPGFT DRLEDTSIYH APQLSDASIN NILGQKFVSK DYDSTEDQRN  240
RIEVATGFEI PLPMLNSTKN HTFAPAALFA SHGFSSGHFS ASRSIAAPSK LELPSIQFDE  300
FHPNNQSMYS RTSAVQPTNL ANDYMNSTML PTTSEHMASR NNDQSEELLH KSHASNCVVK  360
EELSAMSLSS TVSMPCDAMT ESRELDLCEE YQEQDPDYSP LGDSFCDSSL FPASLEELQN  420
SEVYSAHTSS MTGYNEQVVP WYERDVSPIQ EGFMLDTQFY LDDINPSIVD YPPPSEYMIH  480
ETRASIFPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-17451544104C-Myb DNA-Binding Domain
1msf_C8e-17451544104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G28570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692851.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_015692852.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLJ3M8D30.0J3M8D3_ORYBR; Uncharacterized protein
STRINGOB05G28570.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-42myb domain protein 101