PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G28440.1 | ||||||||
Common Name | LOC102707873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 35729.1 Da PI: 6.8293 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.1 | 1.1e-14 | 262 | 305 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ OB05G28440.1 262 RRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERLKKQ 305 69***************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-14 | 256 | 305 | No hit | No description |
SMART | SM00338 | 3.9E-10 | 258 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.553 | 260 | 305 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-10 | 262 | 307 | No hit | No description |
CDD | cd14707 | 5.38E-26 | 262 | 309 | No hit | No description |
Pfam | PF00170 | 1.4E-12 | 262 | 305 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 265 | 280 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MIQAMASHAG GSSGGGRDAG AARGGAMQSL VRQGSLYGLT LNEVQSQLGE PLLSMNLDEL 60 LRSVFPEGVD PDGGGSVAGQ SQPAMGLQRQ GSITMPPELS KKTVDEVWKG IQDVPKRGAE 120 EGGRRRRERQ PTLGEMTLED FLVKAGVVTD GYLKDPNDLP VNMDVVGGTA AAASTSDLNA 180 GAQWVQQYQQ QAFEPQHSSI AAPYMASHLA PQPLAVATGS VLDPIYSDGQ ITSPMLGALS 240 DPQTPGRKRG ASGEIADKIV ERRQKRMIKN RESAARSRAR KQAYTNELEN KVLRLEEENE 300 RLKKQKELDE ILNSAPPPEP KYQLRRTSSA GF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 129 | GRRRRERQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G28440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063398 | 0.0 | AK063398.1 Oryza sativa Japonica Group cDNA clone:001-114-H11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654569.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 3e-86 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | J3M8C0 | 0.0 | J3M8C0_ORYBR; Uncharacterized protein | ||||
STRING | OB05G28440.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2707 | 38 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 3e-67 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 102707873 |
Publications ? help Back to Top | |||
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