PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26770.1
Common NameLOC102711889
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 615aa    MW: 67278.2 Da    PI: 7.6166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-1665111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde+l +av  +  ++Wk+Ia+ +   Rt+ qc +rwqk+l
     OB05G26770.1  65 KGGWTPEEDEKLRKAVGIYNAKNWKKIAESFS-DRTEVQCLHRWQKVL 111
                      688*****************************.************986 PP
2Myb_DNA-binding62.58.4e-20117163148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d vk++G++ W+ Ia+ ++ gR +kqc++rw+++l
     OB05G26770.1 117 KGPWTPEEDDIIIDMVKKHGPKKWSVIAKSLN-GRIGKQCRERWHNHL 163
                      79******************************.*************97 PP
3Myb_DNA-binding44.92.6e-14169212146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT +E+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
     OB05G26770.1 169 KEAWTFQEECVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 212
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.11260111IPR017930Myb domain
SMARTSM007173.9E-1564113IPR001005SANT/Myb domain
PfamPF002491.4E-1465111IPR001005SANT/Myb domain
SuperFamilySSF466894.88E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2267119IPR009057Homeodomain-like
CDDcd001677.10E-1468111No hitNo description
PROSITE profilePS5129431.595112167IPR017930Myb domain
SuperFamilySSF466894.12E-31114210IPR009057Homeodomain-like
SMARTSM007172.3E-18116165IPR001005SANT/Myb domain
PfamPF002491.8E-18117163IPR001005SANT/Myb domain
CDDcd001679.69E-17119163No hitNo description
Gene3DG3DSA:1.10.10.601.0E-27120166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-21167218IPR009057Homeodomain-like
PROSITE profilePS5129417.959168218IPR017930Myb domain
SMARTSM007171.3E-13168216IPR001005SANT/Myb domain
PfamPF002495.4E-13169212IPR001005SANT/Myb domain
CDDcd001672.31E-10171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MGAMPAVKVE GEQDGSAGES KRDLVALSPS VSEGSGHALA SPTASTPGDS IFGSRRKSGP  60
VRRAKGGWTP EEDEKLRKAV GIYNAKNWKK IAESFSDRTE VQCLHRWQKV LDPELIKGPW  120
TPEEDDIIID MVKKHGPKKW SVIAKSLNGR IGKQCRERWH NHLDPQIKKE AWTFQEECVL  180
ARAHCMYGNK WAEIAKLLPG RTDNSIKNHW NSSLRKRLDD NNTTDILQVQ LPVVGDDLEK  240
LPPADNHIDL NKEPTTCSID RLGVVDNSHP TSHQRASNLK DFKGCADYLS LGQPVTSCEP  300
SIADDSAFDL ATHTMKTDSV HDNGTGNNFV CGEVQGINFL NDKGFQINQI SDRVGCSRSS  360
KGGGEAAINR SESSLQSEAH SVGSLCYQIP KIGDIVPAQP PVFSAHYVPE HSSNEMHSPK  420
GYNTPSPAHG KGSDQLSVES ILRSAAENFR DTPSILRRRK RDKPTPAQDN DMKIGRLSSD  480
KFHTPTGKCT TDSPHSFKTA ALLSLRPLDD QGLSSASGSF DVSPTYRLRS KRLAVLKTVK  540
NHLDFSSDGM DVCDTTMKSA CGSSESANAS SGVSVIQGKK LDDHMIGLET LTMDFAHTTK  600
IDATQPNSLA FRNNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68642185159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68642185159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456463RRRKRDKP
2457462RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655378.20.0PREDICTED: uncharacterized protein LOC102711889
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLJ3M7V30.0J3M7V3_ORYBR; Uncharacterized protein
STRINGOB05G26770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-104myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]