PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G26080.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 596aa MW: 65990.4 Da PI: 5.9517

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G26080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.8e-11	286	315	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OB05G26080.1 286 AKTERRLAQNREAARKSRLRKKAYVQQLET 315 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-7	283	359	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	285	329	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	286	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-6	287	330	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-7	287	331	No hit	No description
CDD	cd14708	4.48E-21	287	339	No hit	No description
PROSITE pattern	PS00036	0	290	305	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-28	368	442	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MFKRTQDLLC GTVVDETPRG IRFASVGEDK QETKQHPIIW YLYMLSLPQF LYLPSLEYGN 60 TSMHGACICE PSSLVASSSK LRVLLIDMVQ GEGSSWRMAN DHDRAVPHNQ AVAYGIQGHA 120 VLAAPPANFL ELQPAAAAYF GELEKALIHG SSAGAGVDPG MIQSDAYKES GYLAARPPTL 180 EIFPSWPMSH LQDPYSNSQS VGSTTDSSSA QNTMSQAELV SPVSMRSDSG QEQQQQEVLM 240 VTIDDYNYKQ GLGAAIATAP SFQQHAGGLD MRKHGSIRKD GKLLDAKTER RLAQNREAAR 300 KSRLRKKAYV QQLETSRIRL QQIEQELQRA RSQGSFPGGS SAPGDMSSGA VMFDMEYTRW 360 LDDDSKYMAE LQGALQAQLP DGNLGAIVEE CMRHYDELFH IRAVLAGSDV FHLMTGMWAA 420 PAERCFLWMA GFRPSEILKM LIPQLDPLTE QQLMGMCSLQ QSSEQTEEAL AQGLQQLHQS 480 LADAVGAGPL NDGADVANYT GLMALALGRL ENLESFYRQA DNLRQETLHH MRRILTTRQT 540 ARCFLSIGEY HRRLRALSSL WASRPHENFT ATENASPTGT EFQVIQQSQQ NQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MFKRTQDLLC GTVVDETPRG IRFASVGEDK QETKQHPIIW YLYMLSLPQF LYLPSLEYGN  60
TSMHGACICE PSSLVASSSK LRVLLIDMVQ GEGSSWRMAN DHDRAVPHNQ AVAYGIQGHA  120
VLAAPPANFL ELQPAAAAYF GELEKALIHG SSAGAGVDPG MIQSDAYKES GYLAARPPTL  180
EIFPSWPMSH LQDPYSNSQS VGSTTDSSSA QNTMSQAELV SPVSMRSDSG QEQQQQEVLM  240
VTIDDYNYKQ GLGAAIATAP SFQQHAGGLD MRKHGSIRKD GKLLDAKTER RLAQNREAAR  300
KSRLRKKAYV QQLETSRIRL QQIEQELQRA RSQGSFPGGS SAPGDMSSGA VMFDMEYTRW  360
LDDDSKYMAE LQGALQAQLP DGNLGAIVEE CMRHYDELFH IRAVLAGSDV FHLMTGMWAA  420
PAERCFLWMA GFRPSEILKM LIPQLDPLTE QQLMGMCSLQ QSSEQTEEAL AQGLQQLHQS  480
LADAVGAGPL NDGADVANYT GLMALALGRL ENLESFYRQA DNLRQETLHH MRRILTTRQT  540
ARCFLSIGEY HRRLRALSSL WASRPHENFT ATENASPTGT EFQVIQQSQQ NQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G26080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693199.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X5
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	J3M7N4	0.0	J3M7N4_ORYBR; Uncharacterized protein
STRING	OB05G26080.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-135	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]