PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 162aa    MW: 17475.9 Da    PI: 6.5191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.71.3e-07123106128
           NAM 106 LvfykgrapkgektdWvmheyrl 128
                   +vfy+grap g+kt+W m+eyr+
  OB05G26000.1   1 MVFYRGRAPAGSKTKWKMNEYRA 23 
                   89*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.347160IPR003441NAC domain
SuperFamilySSF1019419.81E-8159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVFYRGRAPA GSKTKWKMNE YRAFEGDDDS DAAAAHATAP APNPYLQTRS EFSLCRLYTR  60
SGCPRQFDRR PSSSVAAAGG GSSRNNPAPS SSTAAAFADE DAEGGKGQKR KRSPPNDGSS  120
SSGDGDGSML QQPQPQHRQR GNDEELVECS TTDWWADLLG WN
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0637033e-63AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBankJN1854423e-63JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692616.11e-116PREDICTED: putative NAC domain-containing protein 61, partial
TrEMBLJ3M7M61e-115J3M7M6_ORYBR; Uncharacterized protein
STRINGOB05G26000.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-14NAC domain containing protein 61