PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G25990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 16322.4 Da PI: 10.3846 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 23 | 68 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W++ Ed+ + a ++ + +W ++a++++ gR++ ++ +++q OB05G25990.1 23 AWSKAEDKVFESALVAFPDHtpnRWVLVASRLP-GRSAQEVWEHYQA 68 7*****************9999***********.***********95 PP | |||||||
2 | Myb_DNA-binding | 25 | 4.5e-08 | 86 | 122 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ +++G g+W+ I+r k+Rt+ q+ s+ qk+ OB05G25990.1 86 LFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 122 79*********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.5E-6 | 20 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-11 | 22 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-6 | 22 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-6 | 23 | 70 | No hit | No description |
Pfam | PF00249 | 3.3E-6 | 23 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.853 | 24 | 70 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 4.228 | 82 | 123 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.01E-11 | 85 | 127 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-10 | 86 | 126 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 7.40E-6 | 86 | 123 | No hit | No description |
SMART | SM00717 | 13 | 86 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 87 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAFYRGGSSS WAAAMMAAPS SRAWSKAEDK VFESALVAFP DHTPNRWVLV ASRLPGRSAQ 60 EVWEHYQALV SDVDLIERGM VESPGLFLEG LEKYGRGDWR NISRWSVKTR TPTQVASHAQ 120 KFFIRQANAG SRGDTKRKSI HDITAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G25990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971405 | 5e-71 | EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692615.1 | 3e-89 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 8e-35 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | J3M7M5 | 1e-103 | J3M7M5_ORYBR; Uncharacterized protein | ||||
STRING | OB05G25990.1 | 1e-104 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-34 | MYB family protein |
Publications ? help Back to Top | |||
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