PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G25260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 134aa MW: 15379.5 Da PI: 9.0405 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl OB05G25260.1 14 KGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.411 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.46E-22 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.91E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 5.39 | 62 | 102 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-9 | 65 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 32 | 66 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDELIIR LHGLLGNKAS NGMELGTGER WRNANMNFYL VNDQKQFFKA 120 EVMHGPLTID QSHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-17 | 13 | 98 | 26 | 110 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G25260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130600 | 1e-107 | AC130600.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0048I21, complete sequence. | |||
GenBank | AK066834 | 1e-107 | AK066834.1 Oryza sativa Japonica Group cDNA clone:J013083O13, full insert sequence. | |||
GenBank | AK099108 | 1e-107 | AK099108.1 Oryza sativa Japonica Group cDNA clone:J023030O22, full insert sequence. | |||
GenBank | AK104053 | 1e-107 | AK104053.1 Oryza sativa Japonica Group cDNA clone:001-023-G03, full insert sequence. | |||
GenBank | AP014961 | 1e-107 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-107 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | D88617 | 1e-107 | D88617.1 Oryza sativa mRNA for OSMYB1, complete cds. | |||
GenBank | EU837246 | 1e-107 | EU837246.1 Oryza sativa Japonica Group clone KCS051A09 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654438.1 | 4e-60 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 1e-56 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | J3M7F2 | 2e-96 | J3M7F2_ORYBR; Uncharacterized protein | ||||
STRING | OB05G25260.1 | 3e-97 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-58 | myb domain protein 6 |
Publications ? help Back to Top | |||
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