PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G24670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 419aa    MW: 45065.2 Da    PI: 6.7996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G24670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.7e-49661912128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++
  OB05G24670.1  66 MPGFRFHPTEEELIEFYLRRKVEGRRFNI-ELITFLDLYRYDPWMLPAMATIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENNR 161
                   79***************************.89***************888889******************************************** PP

           NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                    +glkktLvfy+g+apkg++++W+m+eyrl
  OB05G24670.1 162 PIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 191
                   ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5665214IPR003441NAC domain
PROSITE profilePS5100554.45365214IPR003441NAC domain
PfamPF023651.7E-2467191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRGGEGEGAM SRDVAIDDGV GAGSVDVTST AAGTSGPGEE AGGSASGTEE QAAGGGGDSH  60
ENDLVMPGFR FHPTEEELIE FYLRRKVEGR RFNIELITFL DLYRYDPWML PAMATIGEKE  120
WFFYVPRDRK YRNGDRPNRV TASGYWKATG ADRMIRAENN RPIGLKKTLV FYSGKAPKGV  180
RSSWIMNEYR LPPPAADADL FYKSEISLCR VYKRSGIDDG HGHHQRPSGN TAGLPARRHR  240
SSPSTSSTPL SPTQQLPSFH QLLQGESSSS SLPASATCNA SQLMPPPPPR PCAYTPAMGS  300
MTAVAPAPTE SAAVLASTYS LLNMAPHAAV AGSSSTSIDE LSTLVGHHSH AAYGNHPDAG  360
SHHFLPLPAP TSQLMPQLGT TLPTSPLPAV SDKLWDWNSV PDHTTDREYK YSSGLSDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-556721519166NO APICAL MERISTEM PROTEIN
1ut4_B3e-556721519166NO APICAL MERISTEM PROTEIN
1ut7_A3e-556721519166NO APICAL MERISTEM PROTEIN
1ut7_B3e-556721519166NO APICAL MERISTEM PROTEIN
4dul_A3e-556721519166NAC domain-containing protein 19
4dul_B3e-556721519166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G24670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029021e-179AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655332.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ9ZVP81e-96NAC35_ARATH; NAC domain-containing protein 35
TrEMBLJ3M7930.0J3M793_ORYBR; Uncharacterized protein
STRINGOB05G24670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-95NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]