PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G24480.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 191aa    MW: 21905.2 Da    PI: 8.6326
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G24480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.92.5e-46101381128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lp+GfrFhPtdeelvv+yL++++ g+ +++  +i++vdiy+++Pw+Lp+ +  +e ewyfF+ rd+ky+++ r++r+++sg+Wkatg+dk++ ++  
  OB05G24480.1  10 LPMGFRFHPTDEELVVNYLQRRAIGQMCPI-PIIADVDIYNFNPWELPSVALFGEYEWYFFTLRDHKYPNSVRSSRSAASGFWKATGTDKPIQVAsm 105
                   799***************************.88***************66666889************************************99866 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++ + +kk Lvfy gr p  +kt+W+mheyrl
  OB05G24480.1 106 QDTPIAMKKALVFYVGRPPMETKTTWIMHEYRL 138
                   7777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-564173IPR003441NAC domain
PROSITE profilePS5100552.16710173IPR003441NAC domain
PfamPF023657.7E-2511138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTMQQVFPIL PMGFRFHPTD EELVVNYLQR RAIGQMCPIP IIADVDIYNF NPWELPSVAL  60
FGEYEWYFFT LRDHKYPNSV RSSRSAASGF WKATGTDKPI QVASMQDTPI AMKKALVFYV  120
GRPPMETKTT WIMHEYRLTN TRGPPMASYS SSSTPQYPWV TLDEWVLCKI FSKAPGPEPN  180
SNTPPSNVTR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-581017315168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G24480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655325.11e-142PREDICTED: NAC transcription factor 25-like
SwissprotA0SPJ61e-61NAMB2_TRITD; NAC transcription factor NAM-B2
SwissprotQ8GY428e-62NAC25_ARATH; NAC transcription factor 25
TrEMBLJ3M7741e-141J3M774_ORYBR; Uncharacterized protein
STRINGOB05G24480.11e-141(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162071212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-64NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]