PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G22940.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 345aa    MW: 38602.4 Da    PI: 8.6956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G22940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-131167155
           AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                  s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  OB05G22940.1 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
                  57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-81167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-151177IPR016177DNA-binding domain
SMARTSM003802.2E-181281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-121276IPR001471AP2/ERF domain
PROSITE profilePS5103218.2281275IPR001471AP2/ERF domain
PRINTSPR003673.1E-51324IPR001471AP2/ERF domain
PRINTSPR003673.1E-55777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFSRGLP KYRGLPRQLH  120
NSRWDASLGH LLGNDYMSLG SGKDITLDGK FAGTFGLERK IDLTNYIRWW LPKKTRQSDT  180
SKVEEVTDEI RAIESSMQRT EPYKLPSLGL HSNSKPTSVG LSACGILSQS DAFKSFLEKS  240
TKLSEECSKE MDEGKTVTPV PASGNDTTPV NMNMNELLVQ RAPYTLAPVT AQMKNTWNPA  300
DPSADPLFWS NFILPSSQPV TMATIATTTF AKNEVSSSDP FQSQE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G22940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654350.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK25e-95AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLJ3M6S00.0J3M6S0_ORYBR; Uncharacterized protein
STRINGOB05G22940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.17e-93AP2 family protein