PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G22510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 22495.5 Da PI: 6.7953 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 6e-14 | 32 | 75 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++ Ed ll ++v+++G +W +Ia ++g gR++ +c++rw OB05G22510.1 32 KVAWSAHEDGLLRELVREHGDSRWGLIAGKLG-GRSARSCQNRWA 75 568*****************************.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.904 | 27 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-11 | 31 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.65E-12 | 31 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-12 | 32 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-14 | 32 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-12 | 34 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAALEEGGAS GGAGEGPPPA PRKEQKATKS TKVAWSAHED GLLRELVREH GDSRWGLIAG 60 KLGGRSARSC QNRWARIRRN RNTLPLFPLT LGFEDQSPRQ APPLVVFRED DDDIPRHRRG 120 SGDAPECLVL FPLAPSLDVV RDNAASTTST AMDVDSEEVR LLTELRLAPP AMNVVFDARP 180 LQALPMNLPK YNITATPLED SGVLRF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G22510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3M6M7 | 1e-147 | J3M6M7_ORYBR; Uncharacterized protein | ||||
STRING | OB05G22510.1 | 1e-147 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 9e-09 | myb domain protein 119 |