PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G20870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8013.19 Da PI: 10.1158 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.6e-19 | 15 | 56 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +g+W++eEd+ll av+++G+++W++I+++++ gR++k+c++r OB05G20870.1 15 KGSWSPEEDDLLRAAVARHGPRNWTAISEEVP-GRSGKSCRLR 56 799*****************************.********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.022 | 10 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 12 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-14 | 13 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-18 | 15 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.25E-16 | 17 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MVVAGEGSAS GAKIKGSWSP EEDDLLRAAV ARHGPRNWTA ISEEVPGRSG KSCRLRKSKL 60 LVVKLGNDDL GVVVSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G20870.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136221 | 2e-44 | AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence. | |||
GenBank | AP014961 | 2e-44 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 2e-44 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439611.1 | 3e-21 | myb-related protein 330 | ||||
Swissprot | O23160 | 4e-17 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | J3M663 | 7e-46 | J3M663_ORYBR; Uncharacterized protein | ||||
STRING | OB05G20870.1 | 1e-46 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-17 | myb domain protein 70 |
Publications ? help Back to Top | |||
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