PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G20700.1
Common NameLOC102715207
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 377aa    MW: 40676.6 Da    PI: 4.7231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G20700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-1985135155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa+a++ a+++++g
  OB05G20700.1  85 CDFRGVRQRT-WGKWVAEIREP---N-RlSRLWLGTFPTAEAAARAYDDAARAMYG 135
                   689****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1385135IPR001471AP2/ERF domain
CDDcd000184.74E-1785143No hitNo description
SMARTSM003801.0E-3586149IPR001471AP2/ERF domain
PROSITE profilePS5103222.47186143IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2087144IPR016177DNA-binding domain
PRINTSPR003674.9E-108798IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3187144IPR001471AP2/ERF domain
PRINTSPR003674.9E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTVDRKTAIM PPPVEMPPVQ PGRKKRPRRS RDGPTSVAET IKRWAELNKQ LEHGSQGPKQ  60
ARKAPAKGSK KGCMKGKGGP ENTHCDFRGV RQRTWGKWVA EIREPNRLSR LWLGTFPTAE  120
AAARAYDDAA RAMYGPMART NFPRQHVPAA SAQVALATVK GVLPSGLSAC ESGTSTHVAP  180
AAVQDVLPSG LSACESTTTS NNHSDVASTL HKPEFSEISS PLRAAPAVLV DGSLYEDKVG  240
SITYDENIVS QQCAPPEAET SSGRGEEVFE PLEPIASLPE DQEDCFDIDE MLKMMEDDPM  300
NKGSWQPNGE GLTNGGGVDP MGMGEIGQDE PLYLEGVDPA MLENMLKSFD SGPAWLSEDP  360
AMFISGGFED AEFFQGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15841461275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G20700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9158430.0JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693218.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R41e-171DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLJ3M6460.0J3M646_ORYBR; Uncharacterized protein
STRINGOB05G20700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.28e-37DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]