PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G18710.1
Common NameLOC102704615
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 322aa    MW: 35539.1 Da    PI: 8.6696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G18710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-056486123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ Cg+ F++   L  H+++H
  OB05G18710.1 64 YSCSFCGREFRSAQALGGHMNVH 86
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-66190No hitNo description
Gene3DG3DSA:3.30.160.602.7E-46288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2176491IPR007087Zinc finger, C2H2
PfamPF139124.4E-66487IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDPARYWVLA RRKLGDQKTP LFPNTPHITV GGSSASYYES WEERAFAEDS AGHLGGCIWP  60
PRSYSCSFCG REFRSAQALG GHMNVHRRDR ARLKLSGIVE DGAGHGGEQN HVMPPHQSYM  120
IQPCRPQIGA GQQHAYIPNH SIGAPPSADT NPNSVCGVIT YPARSLLHVA AARTAWGKQV  180
LTASLVPPKS PSASSGHMTL FPGVVPLPQD HERASTWMSS KLDLRFGENE LKMSVLGCRS  240
RMDFMMNEND KDYQEVAEAN HKRRRIDLEV NPLVLSSSSS KHQQPDGGDG QHHEKVPKHC  300
RSSSVEKLDL ELRLGEAPKK LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-125986229superman protein
2l1o_A5e-125986229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G18710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655160.10.0PREDICTED: uncharacterized protein LOC102704615
TrEMBLJ3M5J70.0J3M5J7_ORYBR; Uncharacterized protein
STRINGOB05G18710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-25C2H2 family protein