PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G16140.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 291aa MW: 32510.6 Da PI: 8.5554

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G16140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	70	120	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ OB05G16140.1 70 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 120 79***********************************************95 PP
2	K-box	97.9	1.5e-32	136	234	2	100
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ss++ ++e +a+++qqe+akLk +i +Lq+++R l G++++++s+++L++Le +L+k+l kiR++Knell+++ie++q++e elq++n +L++k+ OB05G16140.1 136 DTSSTSTVAEINAQHYQQESAKLKLQITTLQNSNRTLGGDNITTMSHRDLKHLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNDNLYLKSKV 232 55677779****************************************************************************************9 PP K-box 99 ee 100 +e OB05G16140.1 233 AE 234 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.1E-41	62	121	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.319	62	122	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-33	63	135	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.06E-45	63	139	No hit	No description
PROSITE pattern	PS00350	0	64	118	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-33	64	84	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-26	71	118	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-33	84	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-33	99	120	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.6E-23	147	232	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.878	148	238	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MQDCSFSPVI REKLANMHIY EEQGAEPSTG LMMNEAAAAA AAAAASPGSG GSGSAGAAEK 60 TAGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS SRGRLYEYSN 120 NSVKATIERY KKANSDTSST STVAEINAQH YQQESAKLKL QITTLQNSNR TLGGDNITTM 180 SHRDLKHLEG RLDKGLGKIR ARKNELLCAE IEYMQRREME LQNDNLYLKS KVAESERGLQ 240 TVNMMGAAST SEYVQNMVHY DPRNLLQFNI MQQPQYYTEQ EDRKAFISDE R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	3e-20	63	134	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	3e-20	63	134	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	3e-20	63	134	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	3e-20	63	134	1	72	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3kov_B	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3kov_I	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3kov_J	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_A	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_B	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_C	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_D	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_I	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
3p57_J	5e-20	63	134	1	72	Myocyte-specific enhancer factor 2A
5f28_A	7e-20	63	134	2	73	MEF2C
5f28_B	7e-20	63	134	2	73	MEF2C
5f28_C	7e-20	63	134	2	73	MEF2C
5f28_D	7e-20	63	134	2	73	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269\|PubMed:16326928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G16140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB232157	0.0	AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBank	FJ750942	0.0	FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654143.1	0.0	PREDICTED: MADS-box transcription factor 58
Swissprot	Q2V0P1	1e-168	MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBL	J3M4U0	0.0	J3M4U0_ORYBR; Uncharacterized protein
STRING	OB05G16140.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP649	37	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	4e-96	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58. Plant Sci., 2012. 183: p. 183-9 [PMID:22195592] Yun D, et al. OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice. Mol Plant, 2013. 6(3): p. 743-56 [PMID:23300256] Yan D, et al. Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. Plant J., 2015. 82(1): p. 12-24 [PMID:25647350] Zheng M, et al. DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa). New Phytol., 2015. 206(4): p. 1476-90 [PMID:25675970] Chen R, et al. A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58. Mol Plant, 2015. 8(7): p. 1069-89 [PMID:25684654] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758]