PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G15660.1
Common NameLOC102719385
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 286aa    MW: 30326.3 Da    PI: 9.7021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G15660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.28.8e-14124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ +  +lG+g+W+ I++++ ++Rt+ q+ s+ qky
     OB05G15660.1 124 PWTEDEHRMFLAGLDKLGKGDWRGISQHFVTTRTPTQVASHAQKY 168
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.25117173IPR017930Myb domain
SuperFamilySSF466893.66E-18118174IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-18120172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-11121167IPR009057Homeodomain-like
SMARTSM007171.4E-10121171IPR001005SANT/Myb domain
CDDcd001673.80E-9124169No hitNo description
PfamPF002491.7E-11124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG QRILENSSSS SSYTATAAAA AAVTCGGLRL FGVQLQVGGS  60
SPLKKCISME CLPSPAYYGA AASPSVSSSS SSLVSIEENT ERISSGYLSD GLMGRGQERK  120
KGVPWTEDEH RMFLAGLDKL GKGDWRGISQ HFVTTRTPTQ VASHAQKYFL RQNSLTQKKR  180
RSSLFDVVEG GKRAAMPIAA SASELQIPSM SLSVGTVKEE ALLPPCLNLM SSSSSASQPS  240
PSLTMLAKPQ VQLQMPDLEL KMSTSRLSDQ SGSSPRTPFF GTISVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G15660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614270.0AK061427.1 Oryza sativa Japonica Group cDNA clone:006-306-H01, full insert sequence.
GenBankAK0655940.0AK065594.1 Oryza sativa Japonica Group cDNA clone:J013029P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654137.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLJ3M4P20.0J3M4P2_ORYBR; Uncharacterized protein
STRINGOB05G15660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-45MYB_related family protein