PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G15660.1 | ||||||||
Common Name | LOC102719385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 30326.3 Da PI: 9.7021 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.8e-14 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ ++ + +lG+g+W+ I++++ ++Rt+ q+ s+ qky OB05G15660.1 124 PWTEDEHRMFLAGLDKLGKGDWRGISQHFVTTRTPTQVASHAQKY 168 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.25 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.66E-18 | 118 | 174 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-18 | 120 | 172 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 121 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 121 | 171 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-9 | 124 | 169 | No hit | No description |
Pfam | PF00249 | 1.7E-11 | 124 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCSG QRILENSSSS SSYTATAAAA AAVTCGGLRL FGVQLQVGGS 60 SPLKKCISME CLPSPAYYGA AASPSVSSSS SSLVSIEENT ERISSGYLSD GLMGRGQERK 120 KGVPWTEDEH RMFLAGLDKL GKGDWRGISQ HFVTTRTPTQ VASHAQKYFL RQNSLTQKKR 180 RSSLFDVVEG GKRAAMPIAA SASELQIPSM SLSVGTVKEE ALLPPCLNLM SSSSSASQPS 240 PSLTMLAKPQ VQLQMPDLEL KMSTSRLSDQ SGSSPRTPFF GTISVT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G15660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061427 | 0.0 | AK061427.1 Oryza sativa Japonica Group cDNA clone:006-306-H01, full insert sequence. | |||
GenBank | AK065594 | 0.0 | AK065594.1 Oryza sativa Japonica Group cDNA clone:J013029P13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654137.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
TrEMBL | J3M4P2 | 0.0 | J3M4P2_ORYBR; Uncharacterized protein | ||||
STRING | OB05G15660.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-45 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102719385 |