PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G15600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 480aa    MW: 53619.1 Da    PI: 8.7238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G15600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.1e-34442181128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk..............kvkaeekewyfFskrdkkyatgkrkn 75 
                   lp+G+rF+Ptd+el+ e+L+ kv++        ++++ + i+   +i++++P++Lp               +v+ +  + +fF++++k+y+tg+rk+
  OB05G15600.1  44 LPAGVRFDPTDQELI-EHLESKVKDGGsgahplIDEFIHtIHGEeGICYTHPENLPGyqsqtefhyrsvqaRVTRDGLSKHFFHRSAKAYTTGTRKR 139
                   799************.99******9997887764443334666558*********9447889888876544333344477***************** PP

           NAM  76 ra.........................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   r+                         +++ +W++tgk++++++ +g+  g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OB05G15600.1 140 RKvlaagadqpdaadrlqankssssvaAAETRWHKTGKTRAIMV-RGQPRGCKKILVLYtnFGKKRKSEKTNWVMHQYHL 218
                   *88*********************99877899************.999***********54479999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3237237IPR003441NAC domain
PROSITE profilePS5100528.52744237IPR003441NAC domain
PfamPF023652.1E-1545218IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSSVSVSIGT EHDDRRPTTA ASRRCPSCGH EPADRHKPFD MAGLPAGVRF DPTDQELIEH  60
LESKVKDGGS GAHPLIDEFI HTIHGEEGIC YTHPENLPGY QSQTEFHYRS VQARVTRDGL  120
SKHFFHRSAK AYTTGTRKRR KVLAAGADQP DAADRLQANK SSSSVAAAET RWHKTGKTRA  180
IMVRGQPRGC KKILVLYTNF GKKRKSEKTN WVMHQYHLGE LEDEREGELI VSKVFYQTQA  240
RSATAAATSA AEPEAPAAIR DGLHGCVASS GAAAMDVLRQ QQKQQVPKPK QGDGRFVSVP  300
TRKRLHEDVV TQVRVDRGGE QRDSHGSFHL DAASVPTSFS TSDLTSSGST VASPLVQHTP  360
VVPRVIDNQF RSPVMLFQGE HFHETQNDLQ QKLGQRSAHL EELITACQKE ITKGKPSIHQ  420
LQKVDSPHQR WPPDNPDYQD KLFDKLQTAV QKAAFDCFFG RFMEHFVRVL WVALWAWEEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G15600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307301e-89AC130730.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0681D04, complete sequence.
GenBankAC1324861e-89AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK2422271e-89AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankAP0149611e-89AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-89CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankJQ0880961e-89JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692934.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
TrEMBLJ3M4N60.0J3M4N6_ORYBR; Uncharacterized protein
STRINGOB05G15600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.15e-82NAC domain containing protein 75