PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G12230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 326aa    MW: 35677.9 Da    PI: 5.582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G12230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-193380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
     OB05G12230.1 33 RGPWTVEEDALLVDYIATHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 80
                     89********************************************97 PP
2Myb_DNA-binding52.79.9e-1786129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
     OB05G12230.1  86 RGNITAEEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 129
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2172884IPR017930Myb domain
SuperFamilySSF466891.98E-3131127IPR009057Homeodomain-like
SMARTSM007173.0E-163282IPR001005SANT/Myb domain
PfamPF002495.0E-173380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-243487IPR009057Homeodomain-like
CDDcd001672.88E-133580No hitNo description
PROSITE profilePS5129418.57985135IPR017930Myb domain
SMARTSM007171.2E-1485133IPR001005SANT/Myb domain
PfamPF002494.6E-1586129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2388134IPR009057Homeodomain-like
CDDcd001676.60E-1290129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDLEMEMEMM GMPMSPAMSA AAVASEDEGD LRRGPWTVEE DALLVDYIAT HGEGRWNSLA  60
RCAGLRRTGK SCRLRWLNYL RPDVRRGNIT AEEQLLILDL HSRWGNRWSK IAQYLPGRTD  120
NEIKNYWRTR VQKHAKQLRC DVNSKQFRDV VRHVWMPRLV ERIQAADSSA AAESDDVPVA  180
PPVMVTRSMS SPAGAMYHHG QRSGAAPAAG AQFYHRRLHG GAGAGETSCS EPSQVVTMSP  240
DDASSALQSS SSHLFIASPS SAGTVAAASG VIDGDVLSGS WSELLATTTT VTGRDGPTAG  300
LPDFDELGDL EDNLWSLEDI WLHQQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-253012724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G12230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692470.10.0PREDICTED: LOW QUALITY PROTEIN: anthocyanin regulatory C1 protein
TrEMBLJ3M3P90.0J3M3P9_ORYBR; Uncharacterized protein
STRINGOB05G12230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-80myb domain protein 112