PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G12100.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 359aa    MW: 40562.3 Da    PI: 5.0642
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G12100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092913252155
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   + +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  OB05G12100.1 291 RWPYPTEEDKVRLAAMTGLDPKQINNWFVNQRKRH 325
                   569*****************************885 PP
2ELK32.91.5e-11245266122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK++Ll+KYsg+L+ L++EF+
  OB05G12100.1 245 ELKEMLLKKYSGCLSRLRSEFL 266
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012569.6E-17150201IPR005541KNOX2
PfamPF037912.5E-19154194IPR005541KNOX2
SMARTSM011883.6E-6245266IPR005539ELK domain
PROSITE profilePS5121310.423245265IPR005539ELK domain
PfamPF037891.7E-8245266IPR005539ELK domain
PROSITE profilePS5007112.714265328IPR001356Homeobox domain
SuperFamilySSF466892.87E-19267336IPR009057Homeodomain-like
SMARTSM003892.2E-13267332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-26270330IPR009057Homeodomain-like
CDDcd000863.34E-12277329No hitNo description
PfamPF059202.8E-16285324IPR008422Homeobox KN domain
PROSITE patternPS000270303326IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEDLYSIHPG ISRGGGAASE ASGVAGGGSS XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XGEIGLDPEL DEFMETYCRV LERYKEELSR  180
PFDEAASFLT GIHTRPPPPG GGGAAPPPTD NSDEMVGSSE DEPCSGDADA ADFGQEHSSR  240
LADHELKEML LKKYSGCLSR LRSEFLKKRK KGKLPKDARS ALMEWWNTHY RWPYPTEEDK  300
VRLAAMTGLD PKQINNWFVN QRKRHWKPSE DMRFALMEGV TGGSSSGTTL YFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260269LRSEFLKKRK
2266270KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G12100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0501800.0AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692467.11e-151PREDICTED: LOW QUALITY PROTEIN: homeobox protein knotted-1-like 10, partial
SwissprotA2Y0071e-130KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL51e-130KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLJ3M3N61e-149J3M3N6_ORYBR; Uncharacterized protein
STRINGOB05G12100.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.24e-55KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]