PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G10760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1225aa MW: 140204 Da PI: 8.591 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.9 | 3.3e-106 | 355 | 719 | 1 | 365 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL++cA+av+++d la++l++++++++s dgd++qRla+y++ +L+arla+ +s++y++l +++ts +++ l+a++l ++P+ + s+ OB05G10760.1 355 LRSLLIHCAQAVAADDRLLASELVKKIRHHSSADGDSNQRLAFYLVDGLEARLAGIGSQMYHKLMARRTS---TENMLKAYSLKLSACPFDRASFAF 448 689*************************************************************999999...788899999999************ PP GRAS 98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++Il+a +g+ ++vHi+Df+i G+QWp+L+q +a+ ++gpp+lRiTg++ p++g e +eetg+rLa++A+ ++vpf+++ +a+r+e+++ OB05G10760.1 449 SNHTILDASKGQqpRKVHIVDFGICTGFQWPSLIQRFANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFNVPFQYQG-IASRWETIQ 544 ************999******************************************9999999***********************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +e+L+++++E+l++n+++++++l de v+++s+rd+vLk++k ++P+v+++ + +++s+ F +rf e l +ys+lfd+++a++pr++e+r+++Er OB05G10760.1 545 IEDLNIDKDEVLIINCMFRMKNLGDEMVAMNSARDRVLKTIKMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRDNEARKMIER 641 ************************************************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 l+g+++ n++acegaer+er e++++W++r +aGFk++p++ + k++ + + ++ + + +e+sg+l++gWk+r OB05G10760.1 642 GLFGKDALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIVNMKKGIYHEDFVADEDSGWLLQGWKGR 719 **********************************************************999***************97 PP | |||||||
2 | GRAS | 350.6 | 2.5e-107 | 856 | 1223 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 L++cA+a++ +d+ a++l+++++++asp+gd qRla +f+ +L+a+la+++s++y++l +++ts + l+a++l+ ++P+ +++ OB05G10760.1 856 FLMQCAQAIACNDHPFASELIKKIRHHASPYGDGSQRLANCFADGLEAHLAGTGSQMYEKLMTKQTS---ARDMLKAYHLYIVACPFEMVTYYFS 947 69****************************************************************9...99*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++I + +eg+ ++HiiDf+i G+QWp+L+q La+ ++gpp+lRiTg++ p++g +e++eetg+rLa++A+ ++vpf+++ +a+r+e++ + OB05G10760.1 948 NKTIIDVLEGKPTLHIIDFGILFGFQWPCLIQRLAKGEGGPPKLRITGIDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG-IASRWETICI 1041 ******************************************************9*****************************.7********* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 e+L+++++E+l++n + ++ +l de +++s+rd+vL+++k+++P+v+++ + ++s+ F +rf e l +ys+lfd+l++++pr++e+ri vE OB05G10760.1 1042 EDLSIHKDEVLIINRMSRMRKLGDEMENIDSARDRVLRMMKRMNPEVFILGVVNGLYSSPFFPTRFREVLFHYSSLFDMLDTNVPRNHEARILVE 1136 *********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++g+++ nvvaceg er+er e++++W+ r+ +aGFk++p+++++ k + + ++ + + ++e+sg+l++gWk+r + ++S W+ OB05G10760.1 1137 KDIFGNDALNVVACEGPERTERPESYKQWQVRILRAGFKQLPVDQDILKRSVYYKEFYH-EDFVIDEDSGWLLQGWKGRIIHALSTWK 1223 ***********************************************998777665555.66*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.556 | 329 | 708 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-103 | 355 | 719 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 61.719 | 827 | 1204 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.7E-105 | 856 | 1223 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1225 aa Download sequence Send to blast |
MVIDRRPFVN LYTITETSQP FDDSSSSSQQ QVSLYTYSLS NPRLFSQPTT GSRTYLSGAV 60 ATAGMRNGKS NLGQTQFQID AGASLEYQRI RSNDALYHIS QMLMEDSDER VDLHQGEAAL 120 QAAEKPFYDI LEQVYPPSLN RLPLHSANEP DIPDENTSSN NYHNRQHTSH SSYTMLQPLL 180 TPLSSYSYRR SLFLPNQQAV STAWTSRFDI PSLQTRRGVE GANRFIPSID KLVINLDSDR 240 LSISKMTTKA KVGDKSKYAA FKVTDQRDNP YIMDLDILEG RNSKRYAIYY CEIIRNEMFD 300 KVLLCYGVKN FAEASHLRET MAKEASKNSL NGQTKGSARR KLRYKKQLQK DVVDLRSLLI 360 HCAQAVAADD RLLASELVKK IRHHSSADGD SNQRLAFYLV DGLEARLAGI GSQMYHKLMA 420 RRTSTENMLK AYSLKLSACP FDRASFAFSN HTILDASKGQ QPRKVHIVDF GICTGFQWPS 480 LIQRFANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFNVP FQYQGIASRW 540 ETIQIEDLNI DKDEVLIINC MFRMKNLGDE MVAMNSARDR VLKTIKMMNP RVFILGIVNG 600 SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGKDALN IIACEGAERT 660 ERPESYKQWQ ARCLKAGFKQ LPVDPATLKE IVNMKKGIYH EDFVADEDSG WLLQGWKGRF 720 RRGVEEAKKF VPNIEKLVDD TDRNDLSACK RTIEAREQKG KHENEVHPHV EDLELMEPRN 780 IKHLAISTCG RIRDEMFDSV LLCNRQLPGE VAHLRGMMAK ETSDKPKKVQ RKGCGQGQRK 840 PRSQKEHKEA INLRVFLMQC AQAIACNDHP FASELIKKIR HHASPYGDGS QRLANCFADG 900 LEAHLAGTGS QMYEKLMTKQ TSARDMLKAY HLYIVACPFE MVTYYFSNKT IIDVLEGKPT 960 LHIIDFGILF GFQWPCLIQR LAKGEGGPPK LRITGIDVPQ PGFRPHERIE ETGKRLAEYA 1020 NMFNVPFQYH GIASRWETIC IEDLSIHKDE VLIINRMSRM RKLGDEMENI DSARDRVLRM 1080 MKRMNPEVFI LGVVNGLYSS PFFPTRFREV LFHYSSLFDM LDTNVPRNHE ARILVEKDIF 1140 GNDALNVVAC EGPERTERPE SYKQWQVRIL RAGFKQLPVD QDILKRSVYY KEFYHEDFVI 1200 DEDSGWLLQG WKGRIIHALS TWKPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-47 | 359 | 1223 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G10760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693385.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | J3M3A2 | 0.0 | J3M3A2_ORYBR; Uncharacterized protein | ||||
STRING | OB05G10760.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-156 | GRAS family protein |