PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G10760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1225aa    MW: 140204 Da    PI: 8.591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G10760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.93.3e-1063557191365
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL++cA+av+++d  la++l++++++++s dgd++qRla+y++ +L+arla+ +s++y++l +++ts   +++ l+a++l   ++P+ + s+  
  OB05G10760.1 355 LRSLLIHCAQAVAADDRLLASELVKKIRHHSSADGDSNQRLAFYLVDGLEARLAGIGSQMYHKLMARRTS---TENMLKAYSLKLSACPFDRASFAF 448
                   689*************************************************************999999...788899999999************ PP

          GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    N++Il+a +g+  ++vHi+Df+i  G+QWp+L+q +a+ ++gpp+lRiTg++ p++g    e +eetg+rLa++A+ ++vpf+++  +a+r+e+++
  OB05G10760.1 449 SNHTILDASKGQqpRKVHIVDFGICTGFQWPSLIQRFANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFNVPFQYQG-IASRWETIQ 544
                   ************999******************************************9999999***********************.7******** PP

          GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                   +e+L+++++E+l++n+++++++l de v+++s+rd+vLk++k ++P+v+++   + +++s+ F +rf e l +ys+lfd+++a++pr++e+r+++Er
  OB05G10760.1 545 IEDLNIDKDEVLIINCMFRMKNLGDEMVAMNSARDRVLKTIKMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRDNEARKMIER 641
                   ************************************************************************************************* PP

          GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                    l+g+++ n++acegaer+er e++++W++r  +aGFk++p++  + k++  + + ++ + +  +e+sg+l++gWk+r
  OB05G10760.1 642 GLFGKDALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIVNMKKGIYHEDFVADEDSGWLLQGWKGR 719
                   **********************************************************999***************97 PP

2GRAS350.62.5e-10785612234374
          GRAS    4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98  
                     L++cA+a++ +d+  a++l+++++++asp+gd  qRla +f+ +L+a+la+++s++y++l +++ts     + l+a++l+  ++P+  +++   
  OB05G10760.1  856 FLMQCAQAIACNDHPFASELIKKIRHHASPYGDGSQRLANCFADGLEAHLAGTGSQMYEKLMTKQTS---ARDMLKAYHLYIVACPFEMVTYYFS 947 
                    69****************************************************************9...99*********************** PP

          GRAS   99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 
                    N++I + +eg+ ++HiiDf+i  G+QWp+L+q La+ ++gpp+lRiTg++ p++g   +e++eetg+rLa++A+ ++vpf+++  +a+r+e++ +
  OB05G10760.1  948 NKTIIDVLEGKPTLHIIDFGILFGFQWPCLIQRLAKGEGGPPKLRITGIDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG-IASRWETICI 1041
                    ******************************************************9*****************************.7********* PP

          GRAS  192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 
                    e+L+++++E+l++n + ++ +l de  +++s+rd+vL+++k+++P+v+++   +  ++s+ F +rf e l +ys+lfd+l++++pr++e+ri vE
  OB05G10760.1 1042 EDLSIHKDEVLIINRMSRMRKLGDEMENIDSARDRVLRMMKRMNPEVFILGVVNGLYSSPFFPTRFREVLFHYSSLFDMLDTNVPRNHEARILVE 1136
                    *********************************************************************************************** PP

          GRAS  287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                    + ++g+++ nvvaceg er+er e++++W+ r+ +aGFk++p+++++ k   +  + ++ + + ++e+sg+l++gWk+r + ++S W+
  OB05G10760.1 1137 KDIFGNDALNVVACEGPERTERPESYKQWQVRILRAGFKQLPVDQDILKRSVYYKEFYH-EDFVIDEDSGWLLQGWKGRIIHALSTWK 1223
                    ***********************************************998777665555.66*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.556329708IPR005202Transcription factor GRAS
PfamPF035141.1E-103355719IPR005202Transcription factor GRAS
PROSITE profilePS5098561.7198271204IPR005202Transcription factor GRAS
PfamPF035148.7E-1058561223IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1225 aa     Download sequence    Send to blast
MVIDRRPFVN LYTITETSQP FDDSSSSSQQ QVSLYTYSLS NPRLFSQPTT GSRTYLSGAV  60
ATAGMRNGKS NLGQTQFQID AGASLEYQRI RSNDALYHIS QMLMEDSDER VDLHQGEAAL  120
QAAEKPFYDI LEQVYPPSLN RLPLHSANEP DIPDENTSSN NYHNRQHTSH SSYTMLQPLL  180
TPLSSYSYRR SLFLPNQQAV STAWTSRFDI PSLQTRRGVE GANRFIPSID KLVINLDSDR  240
LSISKMTTKA KVGDKSKYAA FKVTDQRDNP YIMDLDILEG RNSKRYAIYY CEIIRNEMFD  300
KVLLCYGVKN FAEASHLRET MAKEASKNSL NGQTKGSARR KLRYKKQLQK DVVDLRSLLI  360
HCAQAVAADD RLLASELVKK IRHHSSADGD SNQRLAFYLV DGLEARLAGI GSQMYHKLMA  420
RRTSTENMLK AYSLKLSACP FDRASFAFSN HTILDASKGQ QPRKVHIVDF GICTGFQWPS  480
LIQRFANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFNVP FQYQGIASRW  540
ETIQIEDLNI DKDEVLIINC MFRMKNLGDE MVAMNSARDR VLKTIKMMNP RVFILGIVNG  600
SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGKDALN IIACEGAERT  660
ERPESYKQWQ ARCLKAGFKQ LPVDPATLKE IVNMKKGIYH EDFVADEDSG WLLQGWKGRF  720
RRGVEEAKKF VPNIEKLVDD TDRNDLSACK RTIEAREQKG KHENEVHPHV EDLELMEPRN  780
IKHLAISTCG RIRDEMFDSV LLCNRQLPGE VAHLRGMMAK ETSDKPKKVQ RKGCGQGQRK  840
PRSQKEHKEA INLRVFLMQC AQAIACNDHP FASELIKKIR HHASPYGDGS QRLANCFADG  900
LEAHLAGTGS QMYEKLMTKQ TSARDMLKAY HLYIVACPFE MVTYYFSNKT IIDVLEGKPT  960
LHIIDFGILF GFQWPCLIQR LAKGEGGPPK LRITGIDVPQ PGFRPHERIE ETGKRLAEYA  1020
NMFNVPFQYH GIASRWETIC IEDLSIHKDE VLIINRMSRM RKLGDEMENI DSARDRVLRM  1080
MKRMNPEVFI LGVVNGLYSS PFFPTRFREV LFHYSSLFDM LDTNVPRNHE ARILVEKDIF  1140
GNDALNVVAC EGPERTERPE SYKQWQVRIL RAGFKQLPVD QDILKRSVYY KEFYHEDFVI  1200
DEDSGWLLQG WKGRIIHALS TWKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4735912238375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G10760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693385.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
TrEMBLJ3M3A20.0J3M3A2_ORYBR; Uncharacterized protein
STRINGOB05G10760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-156GRAS family protein