PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G10490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 383aa MW: 42379.2 Da PI: 8.1799 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 80 | 102 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ +Cgk+F + L++H +H OB05G10490.1 80 CSyeNCGKTFVDVAALRKHAHVH 102 77779**************9887 PP | |||||||
2 | zf-C2H2 | 18.6 | 5e-06 | 107 | 131 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s LkrH H OB05G10490.1 107 YICQepGCGKKFVDSSKLKRHHLIH 131 889999***************9988 PP | |||||||
3 | zf-C2H2 | 19 | 3.9e-06 | 137 | 161 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH OB05G10490.1 137 FICPhpGCGKAFSLDFNLRSHLKTH 161 789*********************9 PP | |||||||
4 | zf-C2H2 | 16.6 | 2.2e-05 | 167 | 191 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F++ s Lk+H + H OB05G10490.1 167 HVCPfpACGKRFTSDSKLKSHVKGH 191 789999***************9988 PP | |||||||
5 | zf-C2H2 | 12.7 | 0.00037 | 244 | 269 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk + + + L+ H +t H OB05G10490.1 244 FVCPydGCGKAYIHGYKLNLHFKTqH 269 89********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-12 | 73 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.406 | 78 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 78 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.15E-7 | 81 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-13 | 104 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.066 | 107 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 107 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.95E-12 | 118 | 170 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-18 | 128 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.822 | 137 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0011 | 137 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 139 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 165 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.367 | 167 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 167 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 169 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.26E-6 | 170 | 191 | No hit | No description |
SuperFamily | SSF57667 | 1.26E-6 | 239 | 267 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-8 | 240 | 269 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.035 | 244 | 269 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 244 | 277 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 246 | 269 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
WSTLRGRGRG RGEGGDPPRP AARWVKHWIP QDLATSSGKG KCALFKWVRE DVYKNLKDGT 60 GAAEAEAVKT EPTTEILFLC SYENCGKTFV DVAALRKHAH VHNERQYICQ EPGCGKKFVD 120 SSKLKRHHLI HTGQKDFICP HPGCGKAFSL DFNLRSHLKT HALENYHVCP FPACGKRFTS 180 DSKLKSHVKG HEKTGTPITA QYMPASDKPQ ICTKPVTPAA TKPVTTAATK PTAPSPASFA 240 ERPFVCPYDG CGKAYIHGYK LNLHFKTQHP EHGQEENGKI AAPAGEHAVN DRANHYNYAE 300 TGDLAPNPKR SKTNSVHKTP SSKVYNVKIS SASPADISGV KNQWPGKYED DSEETEEDQG 360 NNIEDGWRYG NQNADDEETE YED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 1e-34 | 80 | 193 | 8 | 119 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G10490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103444 | 0.0 | AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692445.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634-like | ||||
TrEMBL | J3M375 | 0.0 | J3M375_ORYBR; Uncharacterized protein | ||||
STRING | OB05G10490.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 9e-98 | C2H2 family protein |