PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G36550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 31983.2 Da PI: 4.8829 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky OB04G36550.1 135 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 179 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.556 | 20 | 82 | IPR017884 | SANT domain |
SMART | SM00717 | 0.011 | 21 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-7 | 24 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00173 | 25 | 78 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-16 | 130 | 185 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-17 | 132 | 182 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-11 | 132 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-10 | 135 | 180 | No hit | No description |
Pfam | PF00249 | 3.5E-11 | 135 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 135 | 178 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAVEEASSSS GGGGGSGEEG GCGGWTREQE KAFENALAAT LGEDEDEDEE GDGMWERIAE 60 AVEGKTPDEV RRHYELLVED VDGIEAGRVP LLVYAGDGGP EEGSAGAGKK GGGGGGHGDK 120 GSAKSAEQER RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT QVASHAQKYF 180 IRLNSMNRER RRSSIHDITS VNNGDASATQ GPITGQPNGQ PTNPGKPSKQ SPQPANAPPG 240 VDAYGTTIGQ PVGGPLVSAV GTPVTLPVPA APHIAYGMHA PVPGAVVPGA PVNMPPMPYP 300 MPPPTSHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 25 | 99 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G36550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. | |||
GenBank | AK106166 | 0.0 | AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653025.2 | 0.0 | PREDICTED: uncharacterized protein LOC102718543 | ||||
Swissprot | Q9FNN6 | 1e-97 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | J3M2N0 | 0.0 | J3M2N0_ORYBR; Uncharacterized protein | ||||
STRING | OB04G36550.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 6e-78 | MYB family protein |
Publications ? help Back to Top | |||
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