PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G36550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 308aa    MW: 31983.2 Da    PI: 4.8829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G36550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
     OB04G36550.1 135 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 179
                      6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.5562082IPR017884SANT domain
SMARTSM007170.0112180IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-72484IPR009057Homeodomain-like
CDDcd001670.001732578No hitNo description
PROSITE profilePS5129416.605128184IPR017930Myb domain
SuperFamilySSF466892.01E-16130185IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-17132182IPR006447Myb domain, plants
SMARTSM007179.3E-11132182IPR001005SANT/Myb domain
CDDcd001673.45E-10135180No hitNo description
PfamPF002493.5E-11135179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10135178IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAVEEASSSS GGGGGSGEEG GCGGWTREQE KAFENALAAT LGEDEDEDEE GDGMWERIAE  60
AVEGKTPDEV RRHYELLVED VDGIEAGRVP LLVYAGDGGP EEGSAGAGKK GGGGGGHGDK  120
GSAKSAEQER RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRER RRSSIHDITS VNNGDASATQ GPITGQPNGQ PTNPGKPSKQ SPQPANAPPG  240
VDAYGTTIGQ PVGGPLVSAV GTPVTLPVPA APHIAYGMHA PVPGAVVPGA PVNMPPMPYP  300
MPPPTSHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1425991178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G36550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686230.0AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
GenBankAK1061660.0AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653025.20.0PREDICTED: uncharacterized protein LOC102718543
SwissprotQ9FNN61e-97SRM1_ARATH; Transcription factor SRM1
TrEMBLJ3M2N00.0J3M2N0_ORYBR; Uncharacterized protein
STRINGOB04G36550.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-78MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]