PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G34960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 67aa MW: 7635.6 Da PI: 9.1381 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 3 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+Wv+eIr+p +r++lg++ tae+Aa+a+++a++ + g OB04G34960.1 3 RYKGVRQRH-WGSWVSEIRHP-----LlyTRIWLGTYETAEDAARAYDEAARLMGG 52 6*******9.**********8.....446**********************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.48E-27 | 2 | 60 | No hit | No description |
SMART | SM00380 | 1.5E-34 | 3 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 3 | 61 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 3 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-33 | 3 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.89 | 3 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MARYKGVRQR HWGSWVSEIR HPLLYTRIWL GTYETAEDAA RAYDEAARLM GGPAARTNFP 60 LTHDGGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 4 | 66 | 6 | 69 | ATERF1 |
3gcc_A | 4e-17 | 4 | 66 | 6 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G34960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108355 | 2e-46 | AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692166.1 | 2e-43 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 4e-33 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | J3M271 | 1e-42 | J3M271_ORYBR; Uncharacterized protein | ||||
STRING | OB04G34960.1 | 2e-43 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 6e-21 | ERF family protein |
Publications ? help Back to Top | |||
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