PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G34790.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 484aa    MW: 51900.3 Da    PI: 6.0242
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G34790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.7e-12134190155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OB04G34790.1 134 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 190
                   57*******************5444.2455536655.779999**************98 PP
2AP252.31.4e-16233284155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OB04G34790.1 233 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 284
                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-18134200No hitNo description
PfamPF008473.4E-9134190IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15134199IPR016177DNA-binding domain
PROSITE profilePS5103217.57135198IPR001471AP2/ERF domain
SMARTSM003801.6E-22135204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-12135199IPR001471AP2/ERF domain
PRINTSPR003672.5E-6136147IPR001471AP2/ERF domain
PfamPF008473.2E-11233284IPR001471AP2/ERF domain
CDDcd000182.29E-24233294No hitNo description
SuperFamilySSF541716.28E-18233294IPR016177DNA-binding domain
PROSITE profilePS5103219.137234292IPR001471AP2/ERF domain
SMARTSM003809.9E-33234298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-18234292IPR001471AP2/ERF domain
PRINTSPR003672.5E-6274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDMDTSHQYP WPLNFSLAHH CDMEEEERGA AAERAAIAGA AQPPKLEDFL GGGGGGGVPV  60
SGPAQTAAAE LYESELKFLA AGFLSGAAAG AAPAPSPPAA LEQNDDKQLV LPQAAVAPAQ  120
EQKKAVDSFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA  180
YDLAALKYWG PSTTTNFPVA EYEKELEEMK HMTRQEFVAS LRRKSSGFSR GASIYRGVTR  240
HHQHGRWQAR IGRVAGNKDL YLGTFGTEEE AAEAYDIAAI KFRGLNAVTN FEISRYNVES  300
IINSNLPIGS MAGNRSSKAL ELAPASSTDG TMPGAAEASH AGVAPPPSTL AFTALPMKYD  360
PADYLSFLAL QHHQQGNLQG LGFGLYSSGV NLDFAGANGN GAMPHCYTNV SLHEQQQQQN  420
QEQDQQDQSQ SSNSCSSNIP FATPIAFSGP YESSTTAAAA AAAASSFGYY PNVAAFQTPI  480
FGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G34790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652934.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-137AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLJ3M2540.0J3M254_ORYBR; Uncharacterized protein
STRINGOB04G34790.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]