PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G34410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 404aa    MW: 43562.6 Da    PI: 10.3214
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G34410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.7e-11691071255
           AP2  12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++W+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OB04G34410.1  69 AKSWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 107
                   589*******......55************************997 PP
2AP245.32.2e-14150200155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+++GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  OB04G34410.1 150 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 200
                   79********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.72253115IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1163116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1369115IPR001471AP2/ERF domain
SMARTSM003804.4E-1971121IPR001471AP2/ERF domain
PfamPF008472.6E-10150200IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-18150210IPR016177DNA-binding domain
CDDcd000182.53E-25150210No hitNo description
PROSITE profilePS5103216.067151208IPR001471AP2/ERF domain
SMARTSM003808.5E-33151214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-17151208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTRRQPRGRR CRPPPTTPAR PRPRPPPWSR YPTKPTTTLP PRPLSRASSS LRPSRAATPP  60
PGRSRAPVAK SWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE  120
DDLKQMTNLT KEEFVHVLRR QSTGFPRGSS KFRGVTLHKC GRWEARMGQF LGKKYVYLGL  180
FDTEEEAARA YDRAAIKCNG KDAVTNFDPS IYAGEFEPAA AAAGDAAEHN LDLSLGSSAG  240
SKRGNLDGGG GGDDESAGGG TGPDQRVPMA FDLDWQTAAA RSTKAKFDQN SKHPQMPPVL  300
QVSHLPFSPR HHQQFVSNGD PGTAGGLSLT IGGVGGQWPP QQQHGWGNAG GTSWPLPPHP  360
AAPPTNAAAT ATAAAASSRF PPYIATQAST WLQKNGFHSL TRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G34410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691597.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLJ3M2160.0J3M216_ORYBR; Uncharacterized protein
STRINGOB04G34410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-82AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]