PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G33590.1 | ||||||||
Common Name | LOC102700424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 396aa MW: 44810.8 Da PI: 6.1316 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.9 | 1.6e-11 | 104 | 142 | 2 | 40 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 +++k+ rr+++NReAAr+sR+RKka+i++Le+ +L + OB04G33590.1 104 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQ 142 5799***************************84443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-8 | 102 | 150 | No hit | No description |
SMART | SM00338 | 2.3E-10 | 103 | 167 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-8 | 105 | 145 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.933 | 105 | 149 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.75E-21 | 107 | 156 | No hit | No description |
SuperFamily | SSF57959 | 6.19E-7 | 109 | 152 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 110 | 125 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.1E-26 | 195 | 269 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MELYPGYLED HFNIHKLSIS SPSPPEYMTS ASTQFAAPVR MGAYDRPPPV GMWSHEQFKV 60 DNGQATSAST IMEAEMKFET RLEEIPQVVL DQEGINLDQE ASKPPDKVLR RLAQNREAAR 120 KSRLRKKAYI QQLETSRLKL AQLEQELQRA RQQGVYANGN LQEPNLGFAG SIDPGALGFE 180 IKYSHWVDEQ NRNTGELRNA LLQGQTSELE LKLLVEAGLE NYNHLFKMKE EAANSNVFYV 240 MSGMWKTPTE RFFLWIGGFR PSEVLKNLRP QLEPLTEQQV AEVSGLQQTS MQVEDALSQG 300 MDKLKQTIAD SLTAADPFGS PEAYMVHMTN AVEQLRSLVQ FVTQADHLRQ QTLQEMHKIL 360 KPPQAARGLV ALGDYFQRFR TLSSLWAARP RDSGIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G33590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073715 | 0.0 | AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692187.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Refseq | XP_015692188.1 | 0.0 | PREDICTED: transcription factor TGA4-like | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | J3M1T4 | 0.0 | J3M1T4_ORYBR; Uncharacterized protein | ||||
STRING | OB04G33590.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3571 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-121 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 102700424 |