PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G32440.1
Common NameLOC102718649
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 308aa    MW: 33763 Da    PI: 7.7461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G32440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-51111451128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhP+deelvv+yL +k++g       ++ +vd++k+ePw+Lp +++ + +ewyf+s +d+kyatg+r+nrat+sgyWkatgkd++++++  
  OB04G32440.1  11 LPPGFRFHPRDEELVVDYLYHKLAGGGGGG-VAMVDVDLNKCEPWELPDAARVGGREWYFYSLHDRKYATGQRTNRATRSGYWKATGKDRAIVVSrr 106
                   79************************9666.569**************8888899*************************************99877 PP

           NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OB04G32440.1 107 rrgavaGGEVVGMRKTLVFYEGRAPRGSKTEWVMHEFRV 145
                   7777777777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-584176IPR003441NAC domain
PROSITE profilePS5100554.75911176IPR003441NAC domain
PfamPF023651.4E-2512145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSLIGMMEAS LPPGFRFHPR DEELVVDYLY HKLAGGGGGG VAMVDVDLNK CEPWELPDAA  60
RVGGREWYFY SLHDRKYATG QRTNRATRSG YWKATGKDRA IVVSRRRRGA VAGGEVVGMR  120
KTLVFYEGRA PRGSKTEWVM HEFRVDGRAV ADHPSSSSTP RHLLKEDWVL CRVFYKSRTV  180
TPRLASGEAG ASMSSELSVP PAPAPLPYAP PAIDAYLAVD RVPAADAGGG YYEHDSSDGY  240
HPPPRPPAAA LPFKELTDFR DLLSNMVQGG AAAKADQAFL GWSEEGGHAQ AQLQLQQSAM  300
ESQPWNQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-47617615168NAC domain-containing protein 19
3swm_B5e-47617615168NAC domain-containing protein 19
3swm_C5e-47617615168NAC domain-containing protein 19
3swm_D5e-47617615168NAC domain-containing protein 19
3swp_A5e-47617615168NAC domain-containing protein 19
3swp_B5e-47617615168NAC domain-containing protein 19
3swp_C5e-47617615168NAC domain-containing protein 19
3swp_D5e-47617615168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G32440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376681e-130CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691750.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-69NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLJ3M1G90.0J3M1G9_ORYBR; Uncharacterized protein
STRINGOB04G32440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.12e-68NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]