PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G32220.1

Common Name

LOC102715578

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 839aa MW: 96148.5 Da PI: 7.8079

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G32220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	2.9e-24	83	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk k+ +n +r fvCs+eg+r++++ k r+r+etrtgC a++ +k+ ++gk++v++++++HnH+l+ OB04G32220.1 83 EYYASYAGNVGFSVRKGLWDKTVKN-VARSRVFVCSREGFRSNNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVSEFVEDHNHQLS 166 69**************9999555.599*********98777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	9.143	1	38	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF03101	1.4E-21	83	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-29	263	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.064	530	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.4E-4	547	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-4	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MQKRSGRQGV QRATSKVPSR QALAERRQRG SRGQFLSKEG AQSADKIEQK AEEEPEVPPE 60 VVANAGGVPI VGMVFENEEK AYEYYASYAG NVGFSVRKGL WDKTVKNVAR SRVFVCSREG 120 FRSNNEAKRP RPETRTGCPA RIAIKLVSNG KYRVSEFVED HNHQLSAPFD IEMLNSQKVF 180 SKIQPGNRNA SNIPPGCKNY IRTKSTAHIN PEDLGALMDY CRRMKSENPS FYYAIQVDEN 240 DKATNVFWAD ARSIVDYHYF CDVICFDTTY KVNDCRKHLA LFLGMNHHRQ MVIFGSAFLY 300 DETVESFKWL FETFKSAMCG KQPKTILTDR SAALKEALSL TWPGTVHRSC LWQIYQNAAK 360 SLKHVFNTFE GFALDFRHCI FDIKDDQEFD EAWNVIVEKY NLKEEEWLNK LYEDRENWAL 420 PYNRQIFLGD IKSMLQAETC CVRLREYLDC EKHIYLFLKL FESSTEKRRQ EEIQADYQAS 480 QGALRVSVPL LWQGANLYTP IIFELFRKEY ELCMDCMAYN CGEFGSLSEY MITVKNKTKD 540 QLVRFDSSDG TVACTCKKFE NAGILCCHIL KVYELRNVKE IAPQYFLKRW RKDAKLGTAD 600 GINGFNFDND TKSSVPERYA AVCRLFYKIA AKAAENVDTF ALMANQSDQL FEEVERILQS 660 TMASKSSVGP SIKDQLTRMV QSDYLLNNSN EAEKSTGKKK NEVYRHKNAL GTNKRQKTRK 720 DTRHPDGATT GPRDGELNMT PENAQSESRN SPNQFLPDQL MQGHYILGHS FENLHNNLNQ 780 FGQASSVPTL QQQAFPVNNQ LAQGYPSDMH GLQFVGTNPQ MEHENTDQTQ SSIPVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MQKRSGRQGV QRATSKVPSR QALAERRQRG SRGQFLSKEG AQSADKIEQK AEEEPEVPPE  60
VVANAGGVPI VGMVFENEEK AYEYYASYAG NVGFSVRKGL WDKTVKNVAR SRVFVCSREG  120
FRSNNEAKRP RPETRTGCPA RIAIKLVSNG KYRVSEFVED HNHQLSAPFD IEMLNSQKVF  180
SKIQPGNRNA SNIPPGCKNY IRTKSTAHIN PEDLGALMDY CRRMKSENPS FYYAIQVDEN  240
DKATNVFWAD ARSIVDYHYF CDVICFDTTY KVNDCRKHLA LFLGMNHHRQ MVIFGSAFLY  300
DETVESFKWL FETFKSAMCG KQPKTILTDR SAALKEALSL TWPGTVHRSC LWQIYQNAAK  360
SLKHVFNTFE GFALDFRHCI FDIKDDQEFD EAWNVIVEKY NLKEEEWLNK LYEDRENWAL  420
PYNRQIFLGD IKSMLQAETC CVRLREYLDC EKHIYLFLKL FESSTEKRRQ EEIQADYQAS  480
QGALRVSVPL LWQGANLYTP IIFELFRKEY ELCMDCMAYN CGEFGSLSEY MITVKNKTKD  540
QLVRFDSSDG TVACTCKKFE NAGILCCHIL KVYELRNVKE IAPQYFLKRW RKDAKLGTAD  600
GINGFNFDND TKSSVPERYA AVCRLFYKIA AKAAENVDTF ALMANQSDQL FEEVERILQS  660
TMASKSSVGP SIKDQLTRMV QSDYLLNNSN EAEKSTGKKK NEVYRHKNAL GTNKRQKTRK  720
DTRHPDGATT GPRDGELNMT PENAQSESRN SPNQFLPDQL MQGHYILGHS FENLHNNLNQ  780
FGQASSVPTL QQQAFPVNNQ LAQGYPSDMH GLQFVGTNPQ MEHENTDQTQ SSIPVWDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	131	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G32220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662950	0.0	AL662950.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CT827952	0.0	CT827952.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692331.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3M1E7	0.0	J3M1E7_ORYBR; Uncharacterized protein
STRING	OB04G32220.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	102715578